Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Forward (+)

22571892 .. 22574849

Gene Structure 2958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG104900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACTGTGAGCAACAGTACCGGCAAAGAACGCCTTATGGTGGAGGTTGTGGGGGCCCACAACCTCATGTTGGACGGCGAAGGCTCATCGTCCCCATTCGTCGAAATCGAATTTGAAAACCAGAGGCTCCGAACCCAGGTCAAGTACAAGGACCTGAACCCCATCGTCGTTTCGAAAATTGGAATTGTTATCCTGATTTGGTCAATACGCTGTTCTCAAGAGGTGTTTTTGTACCACAATGGGTCACTGGCACTGGGAGCATTACCCCAGTTGCTCCTCCTAAATCTCCGAAGTGATGACAACTATTATTTAACGAAAGCAAGTGGGAAGAGCTTGAACAATGGAATGACGACTTTGGCTAGTGGAACGAATGATCAGCAAAACAGAGGAGGCAAAGCAAGGAACACTACTAGCTATTTGGCCTATGGCCACAGGAGTATTGGGTACTACACATTTTCGGTGGCTTTTATACACTCAAGGACGGTCAGAATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

165

Amino Acids

18.37

Weight (kDa)

9.44

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	11 - 55	7.6e-07	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	110, 489
AfaI	GTAC	4 cut(s)	19, 146, 233, 446
AfiI	CCNNNNNNNGG	3 cut(s)	40, 70, 136
AgsI	TTSAA	2 cut(s)	116, 337
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	333, 414
AluI	AGCT	2 cut(s)	333, 414
AoxI	GGCC	3 cut(s)	54, 420, 427
ApaI	GGGCCC	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	110, 489
AspS9I	GGNCC	3 cut(s)	54, 55, 151
AsuII	TTCGAA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	58
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	373
BfaI	CTAG	2 cut(s)	360, 411
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	54, 55, 151
BmiI	GGNNCC	3 cut(s)	55, 56, 128
BmrFI	CCNGG	1 cut(s)	137
BmrI	ACTGGG	2 cut(s)	262, 263
BmuI	ACTGGG	2 cut(s)	262, 263
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	201, 460
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 70, 136
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	3 cut(s)	252, 258, 268
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	3 cut(s)	40, 70, 136
BseNI	ACTGG	3 cut(s)	252, 258, 268
BseRI	GAGGAG	2 cut(s)	266, 402
BseSI	GKGCMC	1 cut(s)	58
BshFI	GGCC	3 cut(s)	56, 422, 429
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	3 cut(s)	40, 70, 136
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	56, 422, 429
Bsp119I	TTCGAA	1 cut(s)	173
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	373
BspANI	GGCC	3 cut(s)	56, 422, 429
BspLI	GGNNCC	3 cut(s)	55, 56, 128
BspQI	GCTCTTC	1 cut(s)	323
BspT104I	TTCGAA	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	252, 258, 268
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	7, 17, 484
Bst6I	CTCTTC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	173
BstKTI	GATC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 257
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	56, 422, 429
BtsIMutI	CAGTG	2 cut(s)	245, 251
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	54, 55, 151
Csp6I	GTAC	4 cut(s)	18, 145, 232, 445
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	9 cut(s)	56, 84, 127, 333, 359, 414, 422, 429, 464
CviKI_1	RGCY	9 cut(s)	56, 84, 127, 333, 359, 414, 422, 429, 464
CviQI	GTAC	4 cut(s)	18, 145, 232, 445
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	2 cut(s)	54, 151
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	1 cut(s)	70
FaiI	YATR	4 cut(s)	38, 68, 426, 470
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	373
FriOI	GRGCYC	1 cut(s)	58
FspBI	CTAG	2 cut(s)	360, 411
HaeIII	GGCC	3 cut(s)	56, 422, 429
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	1 cut(s)	70
HpaII	CCGG	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	131, 290, 488
Hpy188III	TCNNGA	2 cut(s)	193, 218
Hpy99I	CGWCG	2 cut(s)	104, 170
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	3 cut(s)	7, 17, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 257
Hsp92II	CATG	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	373
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	3 cut(s)	132, 257, 279
MaeI	CTAG	2 cut(s)	360, 411
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	4 cut(s)	110, 177, 183, 489
MluNI	TGGCCA	1 cut(s)	429
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	37, 74, 117, 214, 287, 380, 383
Mox20I	TGGCCA	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	429
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	30, 257
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	3 cut(s)	55, 56, 128
NmuCI	GTSAC	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	55, 56, 128
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	3 cut(s)	54, 55, 151
PspPPI	RGGWCCY	1 cut(s)	151
RsaI	GTAC	4 cut(s)	19, 146, 233, 446
RsaNI	GTAC	4 cut(s)	18, 145, 232, 445
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	311
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	3 cut(s)	54, 55, 151
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	7 cut(s)	48, 66, 141, 156, 225, 335, 416
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	2 cut(s)	216, 475
SmoI	CTYRAG	2 cut(s)	216, 475
Sse9I	AATT	4 cut(s)	110, 177, 183, 489
SspMI	CTAG	2 cut(s)	360, 411
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	7, 17, 484
TaqI	TCGA	3 cut(s)	102, 108, 173
TasI	AATT	4 cut(s)	110, 177, 183, 489
TatI	WGTACW	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	2 cut(s)	252, 258
TseFI	GTSAC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	243
TspRI	CASTG	2 cut(s)	252, 258
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	2 cut(s)	110, 489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XspI	CTAG	2 cut(s)	360, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.