Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

18949119 .. 18949928

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37295

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTGGAGGTTGTGGGGGCCCACAACCTCATGTTGGACGGCGAAGGCTCATCATCCCCATTCATCGAAATCGAATTTGAAAACCAGAGGCTCCGAACCCAGGTCAAGTACAAGGACCTGAACCCCATCGTCGTTTCGAAAATTGGAATTGGTTGGGTTCGTCCAGAGCTGCTCTCCGACATCGATTTGCTCGATTCACATTTCAGCTTAATCACGTGGATTGCTAATGAAAATGGGTGGTGGGTTGAGCTTTGGATAGTTGTGTTTGTGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

92

Amino Acids

10.62

Weight (kDa)

4.42

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	74
AcvI	CACGTG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	34, 100
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	169, 207, 250
AluI	AGCT	3 cut(s)	169, 207, 250
AoxI	GGCC	1 cut(s)	18
ApaI	GGGCCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	18, 19, 115
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	22
BbrPI	CACGTG	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	101
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	3 cut(s)	18, 19, 115
BmiI	GGNNCC	3 cut(s)	19, 20, 92
BmrFI	CCNGG	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
Bpu14I	TTCGAA	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 100
BseBI	CCWGG	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	34, 100
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	156
BshFI	GGCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	34, 100
BsnI	GGCC	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	137
Bsp120I	GGGCCC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	20
BspDI	ATCGAT	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	19, 20, 92
BspT104I	TTCGAA	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	18, 19, 115
ClaI	ATCGAT	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	6 cut(s)	20, 48, 91, 169, 207, 250
CviKI_1	RGCY	6 cut(s)	20, 48, 91, 169, 207, 250
CviQI	GTAC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	115
Eco72I	CACGTG	1 cut(s)	216
EcoO109I	RGGNCCY	2 cut(s)	18, 115
EcoRII	CCWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	1 cut(s)	34
FaiI	YATR	1 cut(s)	32
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	1 cut(s)	194
Hpy188I	TCNGA	3 cut(s)	95, 178, 278
Hpy188III	TCNNGA	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	215
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	5 cut(s)	86, 98, 113, 131, 177
Lsp1109I	GCAGC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	3 cut(s)	74, 141, 147
MmeI	TCCRAC	2 cut(s)	15, 201
MnlI	CCTC	2 cut(s)	38, 81
MseI	TTAA	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	3 cut(s)	19, 20, 92
NspV	TTCGAA	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	171
PmaCI	CACGTG	1 cut(s)	216
PmlI	CACGTG	1 cut(s)	216
Ppu21I	YACGTR	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	99
PspCI	CACGTG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	3 cut(s)	19, 20, 92
PspOMI	GGGCCC	1 cut(s)	18
PspPI	GGNCC	3 cut(s)	18, 19, 115
PspPPI	RGGWCCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	1 cut(s)	170
Sau96I	GGNCC	3 cut(s)	18, 19, 115
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	8 cut(s)	12, 30, 105, 120, 171, 209, 218, 252
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	1 cut(s)	115
Sse9I	AATT	3 cut(s)	74, 141, 147
StyD4I	CCNGG	1 cut(s)	99
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	5 cut(s)	66, 72, 137, 183, 192
TasI	AATT	3 cut(s)	74, 141, 147
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	52, 243
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.