Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

54931932 .. 54932180

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG360200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCCAAGTACAAGGACCTCAACCCCGTCTGGAATGAGCCGCTCGAGTTTGTCGTCTCCGACCTGGACAACATGGACTACGAGGAGCTTGAGATTGAGGTCCTCAATGACAAGTGCTACGGCAACAGCGGCACAGCGCGTAAGAACCACTTCCTCGGGGGGGTCAAGCATTACGGCACACAGTTTTCCAAGTGCGGCGACATCGTGTTCAGTTGGATTAGAGGCGAAATCATGCTCAGAATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

82

Amino Acids

9.55

Weight (kDa)

5.0

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	4 - 56	4e-06	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	43
AccII	CGCG	1 cut(s)	139
AciI	CCGC	3 cut(s)	41, 129, 195
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	61
Ama87I	CYCGRG	2 cut(s)	44, 155
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	16, 100
AvaI	CYCGRG	2 cut(s)	44, 155
AvaII	GGWCC	2 cut(s)	16, 100
BalI	TGGCCA	1 cut(s)	5
BceAI	ACGGC	2 cut(s)	136, 190
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	41, 130, 196
BlsI	GCNGC	3 cut(s)	42, 131, 197
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	2 cut(s)	16, 100
BmeT110I	CYCGRG	2 cut(s)	44, 155
BmgT120I	GGNCC	2 cut(s)	16, 100
BmrFI	CCNGG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	2 cut(s)	44, 155
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	44, 155
BspACI	CCGC	3 cut(s)	41, 129, 195
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	236
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	16, 100
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	2 cut(s)	73, 232
CviJI	RGCY	3 cut(s)	5, 40, 88
CviKI_1	RGCY	3 cut(s)	5, 40, 88
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	16, 100
Eco88I	CYCGRG	2 cut(s)	44, 155
EcoO109I	RGGNCCY	2 cut(s)	16, 100
EcoRII	CCWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	2 cut(s)	76, 235
FaiI	YATR	2 cut(s)	74, 233
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	2 cut(s)	72, 231
Fnu4HI	GCNGC	3 cut(s)	41, 130, 196
Fsp4HI	GCNGC	3 cut(s)	41, 130, 196
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	41, 130, 196
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	76, 235
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	61, 239
Hpy188III	TCNNGA	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	76, 235
HspAI	GCGC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	3 cut(s)	16, 50, 77
MbiI	CCGCTC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	240
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	84, 194
MnlI	CCTC	6 cut(s)	29, 76, 91, 113, 164, 215
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	247
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	129
NlaIII	CATG	2 cut(s)	76, 235
PaeR7I	CTCGAG	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	42, 131, 197
PpuMI	RGGWCCY	2 cut(s)	16, 100
Psp5II	RGGWCCY	2 cut(s)	16, 100
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	16, 100
PspPPI	RGGWCCY	2 cut(s)	16, 100
PspXI	VCTCGAGB	1 cut(s)	44
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	247
SatI	GCNGC	3 cut(s)	41, 130, 196
Sau96I	GGNCC	2 cut(s)	16, 100
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	4 cut(s)	21, 66, 90, 102
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	16, 100
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	44, 89
SmoI	CTYRAG	2 cut(s)	44, 89
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	3 cut(s)	41, 129, 195
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	240
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	3 cut(s)	43, 132, 198
Tru1I	TTAA	1 cut(s)	247
Tru9I	TTAA	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	16, 100
XapI	RAATTY	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.