Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040516.1

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 746

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

tacctaaagatggccaggggagctccagcgcttacgtggtggcggacttcgacggccagcggaagcggacggccaccaaatacaaggacctcaaccccgtctggaacgagccgctcgagttcgtcgtctccgaccctgacaatatggactacgaggagctcgagatcgaggtcctcaatgacaagcgctacggcaacagcggcacggcgcgtaagaaccacttcctcggccgggtgaagctctacgggactcagttcgccaagcgtggcgacgagggtttggtgtatttccagctcgagaagaagagcgtgttcagttggattcgaggcgaaatcgggctcagaatttattactacgacgagttagtggacgaggcgccgccgcagcagcagcagcagcagcaacaaccgccgctggaggatccgccgccggagaggccgaggtctccggcggttgtggtggtcgaggaagggagggtgtttgaggtccctggaggacacgttcagactactacatttcatgaaggctcgtactcgcctccggttgtggtcaccgagcaatcgcatccgcagatggttcatatgcacggtcatcctccgccgggtcaggaaatgcacggtcaaggacatccgccgcccggtcaggaaatgcacggtcatccgccaccggaggttcattttcagtcggaggtgaggaagatggagactcagagggttgctccgatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

241

Amino Acids

27.35

Weight (kDa)

5.53

Isoelectric Point (pI)

63.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	375
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	210
AclWI	GGATC	2 cut(s)	415, 428
AcoI	YGGCCR	4 cut(s)	12, 54, 71, 228
AcsI	RAATTY	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	1 cut(s)	532
AfeI	AGCGCT	2 cut(s)	30, 187
AfiI	CCNNNNNNNGG	4 cut(s)	10, 231, 601, 637
AflIII	ACRYGT	1 cut(s)	498
AjnI	CCWGG	2 cut(s)	14, 489
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	4 cut(s)	23, 159, 240, 294
AluI	AGCT	4 cut(s)	23, 159, 240, 294
Alw21I	GWGCWC	2 cut(s)	25, 161
Alw26I	GTCTC	3 cut(s)	132, 449, 697
AlwI	GGATC	2 cut(s)	415, 428
Ama87I	CYCGRG	3 cut(s)	115, 160, 295
Aor51HI	AGCGCT	2 cut(s)	30, 187
AoxI	GGCC	5 cut(s)	12, 54, 71, 228, 436
ApeKI	GCWGC	6 cut(s)	384, 387, 390, 393, 396, 399
ApoI	RAATTY	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	4 cut(s)	31, 188, 210, 378
AspS9I	GGNCC	3 cut(s)	87, 171, 486
AsuC2I	CCSGG	3 cut(s)	232, 602, 638
AsuHPI	GGTGA	3 cut(s)	246, 543, 702
AvaI	CYCGRG	3 cut(s)	115, 160, 295
AvaII	GGWCC	3 cut(s)	87, 171, 486
BalI	TGGCCA	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	3 cut(s)	25, 161, 341
Bbv12I	GWGCWC	2 cut(s)	25, 161
BbvI	GCAGC	6 cut(s)	396, 399, 402, 405, 408, 411
BccI	CCATC	3 cut(s)	4, 567, 693
BceAI	ACGGC	4 cut(s)	69, 86, 207, 221
BciT130I	CCWGG	2 cut(s)	16, 491
BcnI	CCSGG	3 cut(s)	232, 602, 638
BcoDI	GTCTC	3 cut(s)	132, 449, 697
BfoI	RGCGCY	3 cut(s)	32, 189, 379
BglI	GCCNNNNNGGC	1 cut(s)	435
Bme1390I	CCNGG	5 cut(s)	16, 232, 491, 602, 638
Bme18I	GGWCC	3 cut(s)	87, 171, 486
BmeT110I	CYCGRG	3 cut(s)	115, 160, 295
BmgT120I	GGNCC	3 cut(s)	87, 171, 486
BmiI	GGNNCC	3 cut(s)	377, 422, 488
BmrFI	CCNGG	5 cut(s)	16, 232, 491, 602, 638
BmsI	GCATC	1 cut(s)	573
BplI	GAGNNNNNCTC	1 cut(s)	702
BpmI	CTGGAG	3 cut(s)	9, 436, 512
BpuMI	CCSGG	3 cut(s)	232, 602, 638
BsaAI	YACGTR	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	4 cut(s)	15, 225, 439, 489
BsaWI	WCCGGW	2 cut(s)	540, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	4 cut(s)	10, 231, 601, 637
BseBI	CCWGG	2 cut(s)	16, 491
BseDI	CCNNGG	4 cut(s)	15, 225, 439, 489
BseGI	GGATG	4 cut(s)	564, 591, 627, 657
BseLI	CCNNNNNNNGG	4 cut(s)	10, 231, 601, 637
BseMII	CTCAG	3 cut(s)	265, 354, 721
BseRI	GAGGAG	1 cut(s)	169
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	6 cut(s)	396, 399, 402, 405, 408, 411
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	2 cut(s)	231, 725
BshFI	GGCC	5 cut(s)	14, 56, 73, 230, 438
BshNI	GGYRCC	1 cut(s)	375
BsiEI	CGRYCG	2 cut(s)	231, 725
BsiHKAI	GWGCWC	2 cut(s)	25, 161
BsiHKCI	CYCGRG	3 cut(s)	115, 160, 295
BsiSI	CCGG	7 cut(s)	231, 430, 448, 541, 601, 638, 667
BslFI	GGGAC	2 cut(s)	261, 472
BslI	CCNNNNNNNGG	4 cut(s)	10, 231, 601, 637
BsmAI	GTCTC	3 cut(s)	132, 449, 697
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	261, 472
BsnI	GGCC	5 cut(s)	14, 56, 73, 230, 438
Bso31I	GGTCTC	1 cut(s)	449
BsoBI	CYCGRG	3 cut(s)	115, 160, 295
Bsp1286I	GDGCHC	3 cut(s)	25, 161, 341
Bsp143I	GATC	3 cut(s)	164, 420, 722
BspANI	GGCC	5 cut(s)	14, 56, 73, 230, 438
BspCNI	CTCAG	3 cut(s)	264, 353, 720
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	377, 422, 488
BspPI	GGATC	2 cut(s)	415, 428
BspQI	GCTCTTC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	114
BssECI	CCNNGG	4 cut(s)	15, 225, 439, 489
BssMI	GATC	3 cut(s)	164, 420, 722
BssNI	GRCGYC	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	16, 491
Bst4CI	ACNGT	3 cut(s)	589, 619, 655
Bst6I	CTCTTC	1 cut(s)	298
BstACI	GRCGYC	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	3 cut(s)	251, 340, 707
BstEII	GGTNACC	1 cut(s)	549
BstF5I	GGATG	4 cut(s)	564, 591, 627, 657
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	3 cut(s)	32, 189, 379
BstHHI	GCGC	4 cut(s)	31, 188, 210, 378
BstKTI	GATC	3 cut(s)	167, 423, 725
BstMAI	GTCTC	3 cut(s)	132, 449, 697
BstMBI	GATC	3 cut(s)	164, 420, 722
BstMCI	CGRYCG	2 cut(s)	231, 725
BstNI	CCWGG	2 cut(s)	16, 491
BstPI	GGTNACC	1 cut(s)	549
BstSCI	CCNGG	5 cut(s)	14, 230, 489, 600, 636
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	6 cut(s)	396, 399, 402, 405, 408, 411
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	5 cut(s)	14, 56, 73, 230, 438
BtsCI	GGATG	4 cut(s)	564, 591, 627, 657
Cac8I	GCNNGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	519
CfoI	GCGC	4 cut(s)	31, 188, 210, 378
Cfr13I	GGNCC	3 cut(s)	87, 171, 486
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	1 cut(s)	520
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	251, 340, 707
DinI	GGCGCC	1 cut(s)	377
DpnI	GATC	3 cut(s)	166, 422, 724
DpnII	GATC	3 cut(s)	164, 420, 722
EaeI	YGGCCR	4 cut(s)	12, 54, 71, 228
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	5 cut(s)	58, 413, 587, 620, 650
Ecl136II	GAGCTC	2 cut(s)	23, 159
EclXI	CGGCCG	1 cut(s)	228
Eco24I	GRGCYC	3 cut(s)	25, 161, 341
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	3 cut(s)	87, 171, 486
Eco47III	AGCGCT	2 cut(s)	30, 187
Eco52I	CGGCCG	1 cut(s)	228
Eco53kI	GAGCTC	2 cut(s)	23, 159
Eco88I	CYCGRG	3 cut(s)	115, 160, 295
Eco91I	GGTNACC	1 cut(s)	549
EcoICRI	GAGCTC	2 cut(s)	23, 159
EcoO109I	RGGNCCY	3 cut(s)	87, 171, 486
EcoO65I	GGTNACC	1 cut(s)	549
EcoRII	CCWGG	2 cut(s)	14, 489
EcoT38I	GRGCYC	3 cut(s)	25, 161, 341
EgeI	GGCGCC	1 cut(s)	377
EheI	GGCGCC	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	1 cut(s)	523
FaiI	YATR	4 cut(s)	145, 521, 581, 583
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FaqI	GGGAC	2 cut(s)	261, 472
FatI	CATG	1 cut(s)	519
FauNDI	CATATG	1 cut(s)	581
FokI	GGATG	4 cut(s)	551, 578, 614, 644
FriOI	GRGCYC	3 cut(s)	25, 161, 341
GlaI	GCGC	4 cut(s)	30, 187, 209, 377
GsuI	CTGGAG	3 cut(s)	9, 436, 512
HaeII	RGCGCY	3 cut(s)	32, 189, 379
HaeIII	GGCC	5 cut(s)	14, 56, 73, 230, 438
HapII	CCGG	7 cut(s)	231, 430, 448, 541, 601, 638, 667
HhaI	GCGC	4 cut(s)	31, 188, 210, 378
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	4 cut(s)	29, 186, 208, 376
HinP1I	GCGC	4 cut(s)	29, 186, 208, 376
HinfI	GANTC	3 cut(s)	249, 321, 705
HpaII	CCGG	7 cut(s)	231, 430, 448, 541, 601, 638, 667
HphI	GGTGA	3 cut(s)	246, 543, 702
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	6 cut(s)	132, 343, 506, 687, 710, 722
Hpy188III	TCNNGA	6 cut(s)	102, 162, 297, 520, 607, 643
Hpy8I	GTNNAC	1 cut(s)	369
Hpy99I	CGWCG	4 cut(s)	55, 127, 274, 361
HpyAV	CCTTC	2 cut(s)	463, 517
HpyCH4III	ACNGT	3 cut(s)	589, 619, 655
HpyCH4IV	ACGT	2 cut(s)	35, 500
HpyCH4V	TGCA	3 cut(s)	585, 615, 651
HpyF3I	CTNAG	3 cut(s)	251, 340, 707
HpySE526I	ACGT	2 cut(s)	35, 500
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	4 cut(s)	29, 186, 208, 376
KasI	GGCGCC	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	164, 420, 722
LguI	GCTCTTC	1 cut(s)	298
LmnI	GCTCC	4 cut(s)	20, 28, 156, 723
Lsp1109I	GCAGC	6 cut(s)	396, 399, 402, 405, 408, 411
LweI	GCATC	1 cut(s)	573
MaeII	ACGT	2 cut(s)	35, 500
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	3 cut(s)	166, 422, 724
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	3 cut(s)	164, 420, 722
MboII	GAAGA	3 cut(s)	312, 315, 708
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	3 cut(s)	25, 161, 341
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	344
MluNI	TGGCCA	1 cut(s)	14
Mly113I	GGCGCC	1 cut(s)	376
MlyI	GAGTC	2 cut(s)	243, 699
MmeI	TCCRAC	3 cut(s)	155, 298, 665
Mox20I	TGGCCA	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	3 cut(s)	60, 200, 414
MspI	CCGG	7 cut(s)	231, 430, 448, 541, 601, 638, 667
MspR9I	CCNGG	5 cut(s)	16, 232, 491, 602, 638
MvaI	CCWGG	2 cut(s)	16, 491
MvnI	CGCG	1 cut(s)	210
NarI	GGCGCC	1 cut(s)	376
NciI	CCSGG	3 cut(s)	232, 602, 638
NdeI	CATATG	1 cut(s)	581
NdeII	GATC	3 cut(s)	164, 420, 722
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	3 cut(s)	377, 422, 488
NmeAIII	GCCGAG	2 cut(s)	206, 464
NmuCI	GTSAC	1 cut(s)	549
PaeR7I	CTCGAG	3 cut(s)	115, 160, 295
PagI	TCATGA	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	4 cut(s)	113, 122, 128, 158
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	321
Ple19I	CGATCG	1 cut(s)	725
PleI	GAGTC	2 cut(s)	243, 699
PluTI	GGCGCC	1 cut(s)	379
PpsI	GAGTC	2 cut(s)	243, 699
Ppu21I	YACGTR	1 cut(s)	36
PpuMI	RGGWCCY	3 cut(s)	87, 171, 486
Psp124BI	GAGCTC	2 cut(s)	25, 161
Psp5II	RGGWCCY	3 cut(s)	87, 171, 486
Psp6I	CCWGG	2 cut(s)	14, 489
PspEI	GGTNACC	1 cut(s)	549
PspGI	CCWGG	2 cut(s)	14, 489
PspN4I	GGNNCC	3 cut(s)	377, 422, 488
PspPI	GGNCC	3 cut(s)	87, 171, 486
PspPPI	RGGWCCY	3 cut(s)	87, 171, 486
PspXI	VCTCGAGB	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	420
PvuI	CGATCG	1 cut(s)	725
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SacI	GAGCTC	2 cut(s)	25, 161
SapI	GCTCTTC	1 cut(s)	298
Sau3AI	GATC	3 cut(s)	164, 420, 722
Sau96I	GGNCC	3 cut(s)	87, 171, 486
SchI	GAGTC	2 cut(s)	243, 699
ScrFI	CCNGG	5 cut(s)	16, 232, 491, 602, 638
SduI	GDGCHC	3 cut(s)	25, 161, 341
SfaNI	GCATC	1 cut(s)	573
SfoI	GGCGCC	1 cut(s)	377
Sfr274I	CTCGAG	3 cut(s)	115, 160, 295
SinI	GGWCC	3 cut(s)	87, 171, 486
SlaI	CTCGAG	3 cut(s)	115, 160, 295
SmlI	CTYRAG	3 cut(s)	115, 160, 295
SmoI	CTYRAG	3 cut(s)	115, 160, 295
Sse9I	AATT	1 cut(s)	344
SspDI	GGCGCC	1 cut(s)	375
SstI	GAGCTC	2 cut(s)	25, 161
StyD4I	CCNGG	5 cut(s)	14, 230, 489, 600, 636
TaaI	ACNGT	3 cut(s)	589, 619, 655
TaiI	ACGT	2 cut(s)	38, 503
TaqI	TCGA	7 cut(s)	50, 116, 161, 167, 296, 324, 464
TasI	AATT	1 cut(s)	344
TauI	GCSGC	7 cut(s)	114, 203, 381, 384, 414, 429, 636
TfiI	GAWTC	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	6 cut(s)	384, 387, 390, 393, 396, 399
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	4 cut(s)	508, 536, 568, 664
VpaK11BI	GGWCC	3 cut(s)	87, 171, 486
XapI	RAATTY	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XhoI	CTCGAG	3 cut(s)	115, 160, 295
XmnI	GAANNNNTTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.