Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

21331112 .. 21332097

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG210400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGACTGTGAGCAACAGCACCGGCAAAGAATGCCTTGTGGTGGAGGTGGTGGCGGCCTACAACCTCATGCCCAAAGACGGCGAAGGCTCATCGTCCCCATTCGTCGAAATCGAATTTGAAAACCAAAGGCTCCGAACCCAGGTCAAGTACAAGGACCTGAACTCGATTCTCCCTCCTTCTCTCTCTCTATCAGCGACCACTCTAACGACGCCCAATGAAACCCTCCACCAGTTCGGCGTCCTCCTCCAAGCCATGCAGCAGCCGCCGGCGACGAAACCTGCGGAAGAGCTAGCGGCGGAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

101

Amino Acids

11.03

Weight (kDa)

4.87

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	12 - 54	1.4e-07	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AciI	CCGC	5 cut(s)	53, 263, 281, 293, 296
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	209, 237
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	3 cut(s)	40, 77, 139
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	256, 259
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	154
AsuNHI	GCTAGC	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	268, 271
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	140
BfaI	CTAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	5 cut(s)	54, 257, 260, 263, 294
BlsI	GCNGC	5 cut(s)	55, 258, 261, 264, 295
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	140
BmtI	GCTAGC	1 cut(s)	293
BsaHI	GRCGYC	2 cut(s)	209, 237
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 77, 139
Bse118I	RCCGGY	2 cut(s)	20, 265
Bse1I	ACTGG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	40, 77, 139
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	268, 271
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	21, 266
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	40, 77, 139
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	56
BspACI	CCGC	5 cut(s)	53, 263, 281, 293, 296
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	286
BspOI	GCTAGC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	279
BsrFI	RCCGGY	2 cut(s)	20, 265
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	2 cut(s)	20, 265
BssECI	CCNNGG	1 cut(s)	138
BssNI	GRCGYC	2 cut(s)	209, 237
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	2 cut(s)	209, 237
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	267, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 262
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	268, 271
BsuRI	GGCC	1 cut(s)	56
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	267, 291
Cfr10I	RCCGGY	2 cut(s)	20, 265
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	2 cut(s)	217, 226
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	2 cut(s)	67, 253
CviJI	RGCY	6 cut(s)	56, 87, 130, 251, 262, 289
CviKI_1	RGCY	6 cut(s)	56, 87, 130, 251, 262, 289
CviQI	GTAC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	70, 256
FaiI	YATR	2 cut(s)	68, 254
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	66, 252
Fnu4HI	GCNGC	5 cut(s)	54, 257, 260, 263, 294
Fsp4HI	GCNGC	5 cut(s)	54, 257, 260, 263, 294
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	5 cut(s)	54, 257, 260, 263, 294
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	21, 266
HgaI	GACGC	2 cut(s)	217, 226
Hin1I	GRCGYC	2 cut(s)	209, 237
Hin1II	CATG	2 cut(s)	70, 256
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	2 cut(s)	21, 266
Hpy188I	TCNGA	1 cut(s)	134
Hpy99I	CGWCG	3 cut(s)	107, 211, 274
HpyAV	CCTTC	2 cut(s)	77, 186
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 262
Hsp92I	GRCGYC	2 cut(s)	209, 237
Hsp92II	CATG	2 cut(s)	70, 256
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	7 cut(s)	34, 125, 152, 170, 242, 279, 291
Lsp1109I	GCAGC	2 cut(s)	268, 271
MaeI	CTAG	1 cut(s)	290
MboII	GAAGA	1 cut(s)	296
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	6 cut(s)	37, 74, 183, 233, 251, 254
MreI	CGCCGGCG	1 cut(s)	265
MroNI	GCCGGC	1 cut(s)	265
MspI	CCGG	2 cut(s)	21, 266
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	30, 262
NaeI	GCCGGC	1 cut(s)	267
NgoMIV	GCCGGC	1 cut(s)	265
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	70, 256
NlaIV	GGNNCC	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	5 cut(s)	55, 258, 261, 264, 295
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	279
SatI	GCNGC	5 cut(s)	54, 257, 260, 263, 294
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	6 cut(s)	48, 66, 144, 159, 280, 291
SgrAI	CRCCGGYG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	5 cut(s)	53, 263, 281, 293, 296
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	3 cut(s)	105, 111, 164
TasI	AATT	1 cut(s)	113
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	3 cut(s)	56, 265, 296
TfiI	GAWTC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	256, 259
TspDTI	ATGAA	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	113
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.