Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012757.1

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

14027 .. 15929

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012757.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggatggactggattctagcccaagaacaatgatatccattggaaatcctaacacgccgcccagtcgcggctacgatccgcctcccctgacctgcctcacccgaccagcaccaccggtgttcggctctaggtcaatgacaccacgacctgaacggtgtcgtttcagcaaaccccacccctacactcccactcccaaccccaaccccagcagccacaaccagaaccaccgcaaccgcaacagccacctcagccacagaggggccaagtacaaggacctcaaccccgtctggaacgagccgcttgagttcatcgtctccgacccagacaacatggactacaaggagcttgagatcgaggtcctcaatgacaagcgctacggcaacagcagcacggcgcgtaagaaccacttcctcggcagggtcaagctctacggcacacagtttgccaagcgcggcgacgagggtttggtgtatttccagatcgagaaaaagagcatgcgatctcctctctctctctctctcccctccggaaggcgccgacccgtagaactccatcatcgccggcgaggccaccaacggcttcctctcaccggatccttccttggaggatatgacaaggcccagccccgatccgaacccgacacctccgattacgatcgagatcagaagcttaatctccgtctccgccgagatcgagcttgtcctggcttacttaattggcttctgtcatcttttccaaacactgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

249

Amino Acids

28.49

Weight (kDa)

10.04

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	534
AccII	CGCG	3 cut(s)	69, 397, 453
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	8 cut(s)	59, 69, 80, 229, 235, 299, 453, 685
AclWI	GGATC	4 cut(s)	71, 588, 601, 624
AcyI	GRCGYC	1 cut(s)	535
AfaI	GTAC	1 cut(s)	269
AfeI	AGCGCT	1 cut(s)	374
AfiI	CCNNNNNNNGG	6 cut(s)	68, 122, 259, 418, 531, 590
AgeI	ACCGGT	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	4 cut(s)	346, 427, 670, 698
AluI	AGCT	4 cut(s)	346, 427, 670, 698
Alw26I	GTCTC	2 cut(s)	319, 686
AlwI	GGATC	4 cut(s)	71, 588, 601, 624
Aor13HI	TCCGGA	1 cut(s)	527
Aor51HI	AGCGCT	1 cut(s)	374
AoxI	GGCC	3 cut(s)	261, 568, 618
ApeKI	GCWGC	2 cut(s)	210, 387
AsiGI	ACCGGT	1 cut(s)	115
Asp700I	GAANNNNTTC	1 cut(s)	407
AspLEI	GCGC	4 cut(s)	375, 397, 453, 537
AspS9I	GGNCC	4 cut(s)	261, 274, 358, 619
AsuHPI	GGTGA	2 cut(s)	91, 580
AvaII	GGWCC	2 cut(s)	274, 358
BamHI	GGATCC	1 cut(s)	593
BanI	GGYRCC	1 cut(s)	534
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	222, 399
BccI	CCATC	1 cut(s)	561
BceAI	ACGGC	4 cut(s)	394, 408, 448, 593
BciT130I	CCWGG	1 cut(s)	705
BcoDI	GTCTC	2 cut(s)	319, 686
BfaI	CTAG	2 cut(s)	18, 129
BfoI	RGCGCY	2 cut(s)	376, 538
BfuAI	ACCTGC	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	567
BisI	GCNGC	6 cut(s)	59, 70, 211, 299, 388, 454
BlsI	GCNGC	6 cut(s)	60, 71, 212, 300, 389, 455
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	2 cut(s)	274, 358
BmgT120I	GGNCC	4 cut(s)	261, 274, 358, 619
BmiI	GGNNCC	3 cut(s)	262, 536, 595
BmrFI	CCNGG	1 cut(s)	705
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	323, 368
BsaBI	GATNNNNATC	2 cut(s)	654, 660
BsaHI	GRCGYC	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	412, 601
BsaWI	WCCGGW	3 cut(s)	115, 527, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 122, 259, 418, 531, 590
Bse118I	RCCGGY	2 cut(s)	115, 561
Bse1I	ACTGG	2 cut(s)	15, 63
Bse8I	GATNNNNATC	2 cut(s)	654, 660
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	412, 601
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	2 cut(s)	654, 660
BseLI	CCNNNNNNNGG	6 cut(s)	68, 122, 259, 418, 531, 590
BseMII	CTCAG	1 cut(s)	262
BseNI	ACTGG	2 cut(s)	15, 63
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	2 cut(s)	222, 399
BseYI	CCCAGC	2 cut(s)	206, 621
Bsh1236I	CGCG	3 cut(s)	69, 397, 453
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	3 cut(s)	263, 570, 620
BshNI	GGYRCC	1 cut(s)	534
BshTI	ACCGGT	1 cut(s)	115
BsiEI	CGRYCG	1 cut(s)	658
BsiSI	CCGG	4 cut(s)	116, 528, 562, 591
BslI	CCNNNNNNNGG	6 cut(s)	68, 122, 259, 418, 531, 590
BsmAI	GTCTC	2 cut(s)	319, 686
BsmBI	CGTCTC	2 cut(s)	319, 686
BsnI	GGCC	3 cut(s)	263, 570, 620
Bsp13I	TCCGGA	1 cut(s)	527
Bsp143I	GATC	9 cut(s)	76, 351, 480, 500, 593, 629, 655, 661, 691
BspACI	CCGC	8 cut(s)	59, 69, 80, 229, 235, 299, 453, 685
BspANI	GGCC	3 cut(s)	263, 570, 620
BspCNI	CTCAG	1 cut(s)	261
BspEI	TCCGGA	1 cut(s)	527
BspFNI	CGCG	3 cut(s)	69, 397, 453
BspLI	GGNNCC	3 cut(s)	262, 536, 595
BspMI	ACCTGC	1 cut(s)	101
BspPI	GGATC	4 cut(s)	71, 588, 601, 624
BspT107I	GGYRCC	1 cut(s)	534
BsrFI	RCCGGY	2 cut(s)	115, 561
BsrI	ACTGG	2 cut(s)	15, 63
BssAI	RCCGGY	2 cut(s)	115, 561
BssECI	CCNNGG	2 cut(s)	412, 601
BssMI	GATC	9 cut(s)	76, 351, 480, 500, 593, 629, 655, 661, 691
BssNI	GRCGYC	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	2 cut(s)	156, 441
BstACI	GRCGYC	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	497, 563
BstDEI	CTNAG	2 cut(s)	248, 747
BstENI	CCTNNNNNAGG	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	3 cut(s)	69, 397, 453
BstH2I	RGCGCY	2 cut(s)	376, 538
BstHHI	GCGC	4 cut(s)	375, 397, 453, 537
BstKTI	GATC	9 cut(s)	79, 354, 483, 503, 596, 632, 658, 664, 694
BstMAI	GTCTC	2 cut(s)	319, 686
BstMBI	GATC	9 cut(s)	76, 351, 480, 500, 593, 629, 655, 661, 691
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 387, 567
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	703
BstUI	CGCG	3 cut(s)	69, 397, 453
BstV1I	GCAGC	2 cut(s)	222, 399
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	3 cut(s)	263, 570, 620
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	497, 563
CfoI	GCGC	4 cut(s)	375, 397, 453, 537
Cfr10I	RCCGGY	2 cut(s)	115, 561
Cfr13I	GGNCC	4 cut(s)	261, 274, 358, 619
Csp6I	GTAC	1 cut(s)	268
CspAI	ACCGGT	1 cut(s)	115
CviAII	CATG	2 cut(s)	331, 496
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	248, 747
DinI	GGCGCC	1 cut(s)	536
DpnI	GATC	9 cut(s)	78, 353, 482, 502, 595, 631, 657, 663, 693
DpnII	GATC	9 cut(s)	76, 351, 480, 500, 593, 629, 655, 661, 691
EciI	GGCGGA	2 cut(s)	69, 674
Eco130I	CCWWGG	1 cut(s)	601
Eco32I	GATATC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	274, 358
Eco47III	AGCGCT	1 cut(s)	374
EcoNI	CCTNNNNNAGG	1 cut(s)	529
EcoO109I	RGGNCCY	2 cut(s)	274, 358
EcoRII	CCWGG	1 cut(s)	703
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	601
EgeI	GGCGCC	1 cut(s)	536
EheI	GGCGCC	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	601
Esp3I	CGTCTC	2 cut(s)	319, 686
FaeI	CATG	2 cut(s)	334, 499
FaiI	YATR	3 cut(s)	332, 497, 612
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	2 cut(s)	330, 495
Fnu4HI	GCNGC	6 cut(s)	59, 70, 211, 299, 388, 454
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	6 cut(s)	59, 70, 211, 299, 388, 454
FspBI	CTAG	2 cut(s)	18, 129
GlaI	GCGC	4 cut(s)	374, 396, 452, 536
GluI	GCNGC	6 cut(s)	59, 70, 211, 299, 388, 454
GsaI	CCCAGC	2 cut(s)	210, 625
HaeII	RGCGCY	2 cut(s)	376, 538
HaeIII	GGCC	3 cut(s)	263, 570, 620
HapII	CCGG	4 cut(s)	116, 528, 562, 591
HhaI	GCGC	4 cut(s)	375, 397, 453, 537
Hin1I	GRCGYC	1 cut(s)	535
Hin1II	CATG	2 cut(s)	334, 499
Hin6I	GCGC	4 cut(s)	373, 395, 451, 535
HinP1I	GCGC	4 cut(s)	373, 395, 451, 535
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	4 cut(s)	116, 528, 562, 591
HphI	GGTGA	2 cut(s)	91, 580
Hpy188I	TCNGA	4 cut(s)	319, 634, 649, 666
Hpy188III	TCNNGA	5 cut(s)	289, 478, 484, 528, 659
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	525, 607
HpyCH4III	ACNGT	2 cut(s)	156, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 387, 567
HpyF3I	CTNAG	2 cut(s)	248, 747
Hsp92I	GRCGYC	1 cut(s)	535
Hsp92II	CATG	2 cut(s)	334, 499
HspAI	GCGC	4 cut(s)	373, 395, 451, 535
KasI	GGCGCC	1 cut(s)	534
Kpn2I	TCCGGA	1 cut(s)	527
KroI	GCCGGC	1 cut(s)	561
KroNI	GCCGGC	1 cut(s)	563
Kzo9I	GATC	9 cut(s)	76, 351, 480, 500, 593, 629, 655, 661, 691
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	2 cut(s)	222, 399
MaeI	CTAG	2 cut(s)	18, 129
MalI	GATC	9 cut(s)	78, 353, 482, 502, 595, 631, 657, 663, 693
MboI	GATC	9 cut(s)	76, 351, 480, 500, 593, 629, 655, 661, 691
MflI	RGATCY	1 cut(s)	593
MluCI	AATT	1 cut(s)	715
Mly113I	GGCGCC	1 cut(s)	535
MmeI	TCCRAC	1 cut(s)	342
MreI	CGCCGGCG	1 cut(s)	561
MroI	TCCGGA	1 cut(s)	527
MroNI	GCCGGC	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	2 cut(s)	672, 714
MspI	CCGG	4 cut(s)	116, 528, 562, 591
MspR9I	CCNGG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	3 cut(s)	69, 397, 453
MwoI	GCNNNNNNNGC	3 cut(s)	249, 387, 567
NaeI	GCCGGC	1 cut(s)	563
NarI	GGCGCC	1 cut(s)	535
NdeII	GATC	9 cut(s)	76, 351, 480, 500, 593, 629, 655, 661, 691
NgoMIV	GCCGGC	1 cut(s)	561
NlaIII	CATG	2 cut(s)	334, 499
NlaIV	GGNNCC	3 cut(s)	262, 536, 595
NmeAIII	GCCGAG	2 cut(s)	393, 713
NspI	RCATGY	1 cut(s)	499
PaeI	GCATGC	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	14
PinAI	ACCGGT	1 cut(s)	115
PkrI	GCNGC	6 cut(s)	60, 71, 212, 300, 389, 455
Ple19I	CGATCG	1 cut(s)	658
PluTI	GGCGCC	1 cut(s)	538
PpuMI	RGGWCCY	2 cut(s)	274, 358
Psp5II	RGGWCCY	2 cut(s)	274, 358
Psp6I	CCWGG	1 cut(s)	703
PspFI	CCCAGC	2 cut(s)	206, 621
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	3 cut(s)	262, 536, 595
PspPI	GGNCC	4 cut(s)	261, 274, 358, 619
PspPPI	RGGWCCY	2 cut(s)	274, 358
PsuI	RGATCY	1 cut(s)	593
PvuI	CGATCG	1 cut(s)	658
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	672, 714
SatI	GCNGC	6 cut(s)	59, 70, 211, 299, 388, 454
Sau3AI	GATC	9 cut(s)	76, 351, 480, 500, 593, 629, 655, 661, 691
Sau96I	GGNCC	4 cut(s)	261, 274, 358, 619
ScrFI	CCNGG	1 cut(s)	705
SfoI	GGCGCC	1 cut(s)	536
SgrAI	CRCCGGYG	2 cut(s)	115, 561
SinI	GGWCC	2 cut(s)	274, 358
SmlI	CTYRAG	2 cut(s)	302, 347
SmoI	CTYRAG	2 cut(s)	302, 347
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	1 cut(s)	715
SsiI	CCGC	8 cut(s)	59, 69, 80, 229, 235, 299, 453, 685
SspDI	GGCGCC	1 cut(s)	534
SspMI	CTAG	2 cut(s)	18, 129
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	1 cut(s)	601
TaaI	ACNGT	2 cut(s)	156, 441
TaqI	TCGA	4 cut(s)	354, 483, 658, 694
TasI	AATT	1 cut(s)	715
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	4 cut(s)	61, 72, 301, 456
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	672, 714
Tru9I	TTAA	2 cut(s)	672, 714
TscAI	CASTG	1 cut(s)	748
TseI	GCWGC	2 cut(s)	210, 387
TspDTI	ATGAA	1 cut(s)	298
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	1 cut(s)	748
VpaK11BI	GGWCC	2 cut(s)	274, 358
XagI	CCTNNNNNAGG	1 cut(s)	529
XceI	RCATGY	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	2 cut(s)	18, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.