Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

39853870 .. 39859668

Gene Structure 5799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG311600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGACTGTGAGCAACAGTACCGACAAAGAACGCCTTGTGGTGAAGGTTGTGGCGGCCCACAACCTCATGCCCAAAGACGGCGAAGGCTCATCGTCCCCATTCGTCGAAATCGAATTTGAAAACCAGAGGCTCCGAACCCAGGTCAAGTACAAGGACCTGAACCCCATCGTCGTTTCGAAAATTGGAATTGGTTGGATTGAGAAGCACACTAGAAATGTTTCGGAAACCCAGATTCCAATTCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

82

Amino Acids

9.23

Weight (kDa)

8.08

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	11 - 56	2.5e-10	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	2 cut(s)	19, 149
AfiI	CCNNNNNNNGG	2 cut(s)	77, 139
AgsI	TTSAA	2 cut(s)	119, 242
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
AoxI	GGCC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	55, 154
AsuHPI	GGTGA	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	154
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	140
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	55, 154
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 139
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	77, 139
BshFI	GGCC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	77, 139
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	176
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	7, 17
BstBI	TTCGAA	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	55, 154
Csp6I	GTAC	2 cut(s)	18, 148
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	4 cut(s)	56, 87, 130, 245
CviKI_1	RGCY	4 cut(s)	56, 87, 130, 245
CviQI	GTAC	2 cut(s)	18, 148
DdeI	CTNAG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	70
FaiI	YATR	1 cut(s)	68
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	134, 223
Hpy99I	CGWCG	2 cut(s)	107, 173
HpyAV	CCTTC	2 cut(s)	37, 77
HpyCH4III	ACNGT	2 cut(s)	7, 17
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	5 cut(s)	125, 137, 152, 170, 242
MaeI	CTAG	1 cut(s)	210
MluCI	AATT	4 cut(s)	113, 180, 186, 237
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	74, 120
MroXI	GAANNNNTTC	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	2 cut(s)	55, 154
PspPPI	RGGWCCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	19, 149
RsaNI	GTAC	2 cut(s)	18, 148
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	55, 154
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	5 cut(s)	48, 66, 144, 159, 247
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	4 cut(s)	113, 180, 186, 237
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	7, 17
TaqI	TCGA	3 cut(s)	105, 111, 176
TasI	AATT	4 cut(s)	113, 180, 186, 237
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.