Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Forward (+)

6638741 .. 6649949

Gene Structure 11209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG066900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGACTGTGAGCAACAGCACCGTCAAAGAATGCCTTGTGGTGGAGGTGGCGGCGGCCCACAACCTCATGCCCAAAGACGGCGAAGGCTCATCGTCCCCATTCGTCGAAATCGAATTTGAAAACCAGAGGCTCCGAACCCAGATCAGAGGTGGATGCGTGGGCACCCCGGCAAGGAGAGGCTTTGGTCTGCGTAGCTGGTTTTGGGCTTCCTCCAGGTGGCGGCGACGACTTGATGGCATCTATATGGCGGCGTCGGGATGTTGGTGGCGTCTGTGGCACCGGAGTGATGGCCAGTGTGCTCCAACGGTCTACACGGGATGGCAGAGGCTGGGCTGGGTCAACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

115

Amino Acids

13.18

Weight (kDa)

9.68

Isoelectric Point (pI)

75.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	12 - 49	7.7e-06	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	161, 276
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	4 cut(s)	50, 53, 220, 248
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	251, 268
AfiI	CCNNNNNNNGG	5 cut(s)	40, 77, 171, 216, 219
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	212
AleI	CACNNNNGTG	1 cut(s)	282
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
Alw21I	GWGCWC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	2 cut(s)	54, 289
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	291
BanI	GGYRCC	2 cut(s)	161, 276
Bbv12I	GWGCWC	1 cut(s)	301
BccI	CCATC	3 cut(s)	227, 281, 312
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	167
BisI	GCNGC	4 cut(s)	51, 54, 221, 249
BlsI	GCNGC	4 cut(s)	52, 55, 222, 250
Bme1390I	CCNGG	2 cut(s)	167, 214
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	131, 163, 278
BmrFI	CCNGG	2 cut(s)	167, 214
BmsI	GCATC	2 cut(s)	143, 246
BpmI	CTGGAG	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	251, 268
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 77, 171, 216, 219
Bse1I	ACTGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	158, 263, 323
BseLI	CCNNNNNNNGG	5 cut(s)	40, 77, 171, 216, 219
BseNI	ACTGG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	164
BseYI	CCCAGC	2 cut(s)	328, 333
BshFI	GGCC	2 cut(s)	56, 291
BshNI	GGYRCC	2 cut(s)	161, 276
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	167, 280
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	5 cut(s)	40, 77, 171, 216, 219
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	56, 291
Bsp1286I	GDGCHC	2 cut(s)	164, 301
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	4 cut(s)	50, 53, 220, 248
BspANI	GGCC	2 cut(s)	56, 291
BspLI	GGNNCC	3 cut(s)	131, 163, 278
BspT107I	GGYRCC	2 cut(s)	161, 276
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	141
BssNI	GRCGYC	2 cut(s)	251, 268
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	3 cut(s)	7, 22, 307
BstACI	GRCGYC	2 cut(s)	251, 268
BstF5I	GGATG	3 cut(s)	158, 263, 323
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	165, 212
BstSLI	GKGCMC	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	56, 291
BtsCI	GGATG	3 cut(s)	158, 263, 323
BtsIMutI	CAGTG	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	2 cut(s)	240, 257
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	9 cut(s)	56, 87, 130, 180, 195, 206, 291, 328, 333
CviKI_1	RGCY	9 cut(s)	56, 87, 130, 180, 195, 206, 291, 328, 333
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	68, 243, 245
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	51, 54, 221, 249
FokI	GGATG	3 cut(s)	165, 270, 330
Fsp4HI	GCNGC	4 cut(s)	51, 54, 221, 249
GluI	GCNGC	4 cut(s)	51, 54, 221, 249
GsaI	CCCAGC	2 cut(s)	332, 337
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	56, 291
HapII	CCGG	2 cut(s)	167, 280
HgaI	GACGC	2 cut(s)	240, 257
Hin1I	GRCGYC	2 cut(s)	251, 268
Hin1II	CATG	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	167, 280
Hpy166II	GTNNAC	2 cut(s)	310, 340
Hpy188I	TCNGA	2 cut(s)	134, 146
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	2 cut(s)	310, 340
Hpy99I	CGWCG	3 cut(s)	107, 228, 256
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	3 cut(s)	7, 22, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
Hsp92I	GRCGYC	2 cut(s)	251, 268
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	135, 304
LweI	GCATC	2 cut(s)	143, 246
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	164, 301
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	7 cut(s)	37, 74, 120, 140, 170, 220, 318
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	242, 282
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	2 cut(s)	167, 280
MspR9I	CCNGG	2 cut(s)	167, 214
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	274
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	3 cut(s)	131, 163, 278
OliI	CACNNNNGTG	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	35
PkrI	GCNGC	4 cut(s)	52, 55, 222, 250
Psp6I	CCWGG	1 cut(s)	212
PspFI	CCCAGC	2 cut(s)	328, 333
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	131, 163, 278
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	242, 282
SatI	GCNGC	4 cut(s)	51, 54, 221, 249
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	167, 214
SduI	GDGCHC	2 cut(s)	164, 301
SetI	ASST	5 cut(s)	48, 66, 151, 197, 218
SfaNI	GCATC	2 cut(s)	143, 246
SmiMI	CAYNNNNRTG	2 cut(s)	242, 282
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	4 cut(s)	50, 53, 220, 248
StyD4I	CCNGG	2 cut(s)	165, 212
TaaI	ACNGT	3 cut(s)	7, 22, 307
TaqI	TCGA	2 cut(s)	105, 111
TasI	AATT	1 cut(s)	113
TauI	GCSGC	4 cut(s)	53, 56, 223, 251
TscAI	CASTG	1 cut(s)	299
TspRI	CASTG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.