Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Forward (+)

63738143 .. 63750461

Gene Structure 12319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCAAGTACAAGGACCTCAACCCCGTGCGGAACAAGCTGCTCGAGTTCGTCGTCCTCGACCCGGACAACATGGACTACGAGGAGCTCGAGATCGAGGTCCTCAATGACAAGTTGACTTTAACTCTCAGACAATTTGGAGAACACTACAGCAACACGTCTGTTGCCATAATCGACACTCCTCTGACATTCTCTCTTTGTAGAATTACTTCTGATGTTCAAAACCAATGCTCAATATCTAAGCCAAAGAGGTTGACTCCTCCATCTCTGTCAGCCTTTCAGTTCGACTTTAATCCTTTCTCTCACTTGACCCATCTGCAAGGCTGCAACAACACCAATTACACCATCATTTCTCTTTTATCTGATTCTCATAAGTTATTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

128

Amino Acids

14.65

Weight (kDa)

5.44

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	221, 382
AjiI	CACGTC	1 cut(s)	159
AluBI	AGCT	2 cut(s)	40, 88
AluI	AGCT	2 cut(s)	40, 88
Alw21I	GWGCWC	1 cut(s)	90
Ama87I	CYCGRG	2 cut(s)	44, 89
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	40, 324
Asp700I	GAANNNNTTC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	16, 100
AsuC2I	CCSGG	1 cut(s)	65
AvaI	CYCGRG	2 cut(s)	44, 89
AvaII	GGWCC	2 cut(s)	16, 100
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	193, 225
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	27, 311
BccI	CCATC	3 cut(s)	271, 321, 353
BcnI	CCSGG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	148
BisI	GCNGC	2 cut(s)	41, 325
BlsI	GCNGC	2 cut(s)	42, 326
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	2 cut(s)	16, 100
BmeT110I	CYCGRG	2 cut(s)	44, 89
BmgBI	CACGTC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	16, 100
BmrFI	CCNGG	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BpuMI	CCSGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	142
BseRI	GAGGAG	3 cut(s)	98, 171, 249
BseXI	GCAGC	2 cut(s)	27, 311
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	44, 89
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	64
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	44, 89
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	141
BssMI	GATC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	128, 240
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	27, 311
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	16, 100
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	6 cut(s)	5, 40, 88, 244, 275, 324
CviKI_1	RGCY	6 cut(s)	5, 40, 88, 244, 275, 324
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	128, 240
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	16, 100
Eco53kI	GAGCTC	1 cut(s)	88
Eco88I	CYCGRG	2 cut(s)	44, 89
EcoICRI	GAGCTC	1 cut(s)	88
EcoO109I	RGGNCCY	2 cut(s)	16, 100
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	1 cut(s)	76
FaiI	YATR	3 cut(s)	74, 170, 372
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	41, 325
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	41, 325
GluI	GCNGC	2 cut(s)	41, 325
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	2 cut(s)	117, 255
HindII	GTYRAC	2 cut(s)	117, 255
HinfI	GANTC	2 cut(s)	256, 365
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	117, 255
Hpy188I	TCNGA	4 cut(s)	131, 186, 214, 364
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	2 cut(s)	117, 255
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	319, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	128, 240
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	1 cut(s)	78
Lsp1109I	GCAGC	2 cut(s)	27, 311
MaeII	ACGT	1 cut(s)	158
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	134, 204, 337
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	8 cut(s)	29, 68, 76, 91, 113, 192, 243, 270
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	122, 291
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	76
PaeR7I	CTCGAG	2 cut(s)	44, 89
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 57, 87
PdmI	GAANNNNTTC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	42, 326
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PpuMI	RGGWCCY	2 cut(s)	16, 100
Psp124BI	GAGCTC	1 cut(s)	90
Psp5II	RGGWCCY	2 cut(s)	16, 100
PspPI	GGNCC	2 cut(s)	16, 100
PspPPI	RGGWCCY	2 cut(s)	16, 100
PspXI	VCTCGAGB	1 cut(s)	44
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	122, 291
SatI	GCNGC	2 cut(s)	41, 325
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	2 cut(s)	16, 100
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	6 cut(s)	21, 42, 90, 102, 161, 254
SfcI	CTRYAG	1 cut(s)	148
Sfr274I	CTCGAG	2 cut(s)	44, 89
SinI	GGWCC	2 cut(s)	16, 100
SlaI	CTCGAG	2 cut(s)	44, 89
SmlI	CTYRAG	2 cut(s)	44, 89
SmoI	CTYRAG	2 cut(s)	44, 89
Sse9I	AATT	3 cut(s)	134, 204, 337
SsiI	CCGC	1 cut(s)	31
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	6 cut(s)	45, 60, 90, 96, 174, 285
TasI	AATT	3 cut(s)	134, 204, 337
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	122, 291
Tru9I	TTAA	2 cut(s)	122, 291
TseI	GCWGC	2 cut(s)	40, 324
VpaK11BI	GGWCC	2 cut(s)	16, 100
XhoI	CTCGAG	2 cut(s)	44, 89
XmnI	GAANNNNTTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.