Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

39092799 .. 39096758

Gene Structure 3960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG302900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGACTGTGATTATGTTTTCTCACCAAAACCCATCCATGACTGTGAGCAACAGTACCGACAAAGAACGCCTTGTGGTGAAGGTTGTGGCGGCCCACAACCTCATGCCCAAAGACGGCGAAGGCTCATCGTCCCCATTCGTCGAAATCGAATTTGAAAACCAGAGGCTCCGAACCCAGGTCAAGTACAAGGACCTGAACCCCATCGTCGTTTCGAAAATTGGAATTGGTTGGGTTTGTCCAAAGCTGCTCTCCGATGTCGATTTGCTCGATTCACATTTCAGGTTTGTTTATTCCCTCCCTCCCCCCGCCTCATCCTTTATGTTTCTTCACGCCTCTCTCTCTCTCTTCTTTATTCTCGACCCCCTTTCTCTCTCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

6.39

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	23 - 68	1e-09	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	89, 306
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	2 cut(s)	55, 185
AfiI	CCNNNNNNNGG	2 cut(s)	113, 175
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	91, 190
AsuHPI	GGTGA	2 cut(s)	14, 88
AsuII	TTCGAA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	2 cut(s)	40, 209
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	379
BisI	GCNGC	2 cut(s)	90, 245
BlsI	GCNGC	2 cut(s)	91, 246
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	91, 190
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 175
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	32, 311
BseLI	CCNNNNNNNGG	2 cut(s)	113, 175
BseXI	GCAGC	1 cut(s)	231
BshFI	GGCC	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	113, 175
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	212
BspACI	CCGC	2 cut(s)	89, 306
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	7, 43, 53
Bst6I	CTCTTC	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	32, 311
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	32, 311
Cfr13I	GGNCC	2 cut(s)	91, 190
Csp6I	GTAC	2 cut(s)	54, 184
CviAII	CATG	2 cut(s)	37, 103
CviJI	RGCY	4 cut(s)	92, 123, 166, 244
CviKI_1	RGCY	4 cut(s)	92, 123, 166, 244
CviQI	GTAC	2 cut(s)	54, 184
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	40, 106
FaiI	YATR	4 cut(s)	14, 38, 104, 320
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	2 cut(s)	36, 102
FauI	CCCGC	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	90, 245
FokI	GGATG	2 cut(s)	19, 298
Fsp4HI	GCNGC	2 cut(s)	90, 245
FspBI	CTAG	1 cut(s)	379
GluI	GCNGC	2 cut(s)	90, 245
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	40, 106
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	2 cut(s)	14, 88
Hpy188I	TCNGA	2 cut(s)	170, 253
Hpy188III	TCNNGA	1 cut(s)	356
Hpy99I	CGWCG	2 cut(s)	143, 209
HpyAV	CCTTC	2 cut(s)	73, 113
HpyCH4III	ACNGT	3 cut(s)	7, 43, 53
Hsp92II	CATG	2 cut(s)	40, 106
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	5 cut(s)	161, 173, 188, 206, 265
Lsp1109I	GCAGC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	379
MboII	GAAGA	2 cut(s)	317, 337
MluCI	AATT	3 cut(s)	149, 216, 222
MnlI	CCTC	6 cut(s)	110, 156, 305, 309, 319, 343
MslI	CAYNNNNRTG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
NlaIII	CATG	2 cut(s)	40, 106
NlaIV	GGNNCC	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 264
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	91, 246
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	91, 190
PspPPI	RGGWCCY	1 cut(s)	190
RsaI	GTAC	2 cut(s)	55, 185
RsaNI	GTAC	2 cut(s)	54, 184
RseI	CAYNNNNRTG	1 cut(s)	41
SatI	GCNGC	2 cut(s)	90, 245
Sau96I	GGNCC	2 cut(s)	91, 190
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	6 cut(s)	84, 102, 180, 195, 246, 284
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	149, 216, 222
SsiI	CCGC	2 cut(s)	89, 306
SspMI	CTAG	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	7, 43, 53
TaqI	TCGA	6 cut(s)	141, 147, 212, 258, 267, 357
TasI	AATT	3 cut(s)	149, 216, 222
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	149
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.