Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

15645535 .. 15650224

Gene Structure 4690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGACTCCAATGGGACTGAAATTTGGAGGGGCAGCAGGCGTGCCACGATGCTGCAAGGGCAGTAGGAGGCACACGAGTGTGCAAGGGCTGCAGGAGCAGTGCACGCGAGCTGAGCTGCATGCAGGGTTTGTTATGGTTACTGTACGTAAGCTTATAGCTGAGGTTGTTGAGGCTCAAAACCTCTGGCCGAAAGACGGGCATGGCACGTCGAGTCCTTACGTGGTGGAAGACTACTGCGGCCAGCAAAAAGGGACCGAAAAGGCCATAAGGGACTTGAACCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko01100 ko01110 ko01230 map00270 map00450 map01100 map01110 map01230

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

95

Amino Acids

10.36

Weight (kDa)

9.05

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	106
AciI	CCGC	1 cut(s)	237
AcoI	YGGCCR	2 cut(s)	185, 238
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	277
AjiI	CACGTC	1 cut(s)	207
AleI	CACNNNNGTG	2 cut(s)	75, 77
AluBI	AGCT	4 cut(s)	110, 115, 151, 158
AluI	AGCT	4 cut(s)	110, 115, 151, 158
Alw21I	GWGCWC	1 cut(s)	104
Alw44I	GTGCAC	1 cut(s)	100
AoxI	GGCC	3 cut(s)	185, 238, 261
ApaLI	GTGCAC	1 cut(s)	100
ApeKI	GCWGC	4 cut(s)	32, 51, 88, 115
ApoI	RAATTY	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	104
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	4 cut(s)	38, 44, 75, 102
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	5 cut(s)	33, 52, 89, 116, 238
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	5 cut(s)	34, 53, 90, 117, 239
Bme18I	GGWCC	1 cut(s)	252
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu1102I	GCTNAGC	1 cut(s)	111
BsaAI	YACGTR	2 cut(s)	146, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	102, 150
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	38, 44, 75, 102
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	187, 240, 263
BsiHKAI	GWGCWC	1 cut(s)	104
BslFI	GGGAC	3 cut(s)	27, 265, 284
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmFI	GGGAC	3 cut(s)	27, 265, 284
BsnI	GGCC	3 cut(s)	187, 240, 263
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	3 cut(s)	187, 240, 263
BspCNI	CTCAG	2 cut(s)	103, 151
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstBAI	YACGTR	2 cut(s)	146, 220
BstC8I	GCNNGC	6 cut(s)	37, 41, 104, 108, 120, 242
BstDEI	CTNAG	2 cut(s)	111, 159
BstFNI	CGCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 88, 94, 103, 112
BstNSI	RCATGY	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	104
BstSNI	TACGTA	1 cut(s)	146
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	4 cut(s)	38, 44, 75, 102
BstV2I	GAAGAC	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	187, 240, 263
BtrI	CACGTC	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	6 cut(s)	37, 41, 104, 108, 120, 242
Cfr13I	GGNCC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	2 cut(s)	119, 200
CviJI	RGCY	9 cut(s)	88, 110, 115, 151, 158, 173, 187, 240, 263
CviKI_1	RGCY	9 cut(s)	88, 110, 115, 151, 158, 173, 187, 240, 263
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	2 cut(s)	111, 159
EaeI	YGGCCR	2 cut(s)	185, 238
Eco105I	TACGTA	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	252
FaeI	CATG	2 cut(s)	122, 203
FaiI	YATR	5 cut(s)	120, 134, 155, 201, 266
FaqI	GGGAC	3 cut(s)	27, 265, 284
FatI	CATG	2 cut(s)	118, 199
Fnu4HI	GCNGC	5 cut(s)	33, 52, 89, 116, 238
Fsp4HI	GCNGC	5 cut(s)	33, 52, 89, 116, 238
GluI	GCNGC	5 cut(s)	33, 52, 89, 116, 238
HaeIII	GGCC	3 cut(s)	187, 240, 263
Hin1II	CATG	2 cut(s)	122, 203
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	4, 211
Hpy166II	GTNNAC	1 cut(s)	102
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	3 cut(s)	145, 206, 219
HpyCH4V	TGCA	6 cut(s)	54, 82, 91, 102, 118, 122
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 88, 94, 103, 112
HpyF3I	CTNAG	2 cut(s)	111, 159
HpySE526I	ACGT	3 cut(s)	145, 206, 219
Hsp92II	CATG	2 cut(s)	122, 203
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	21, 77, 108, 169, 254
Lsp1109I	GCAGC	4 cut(s)	38, 44, 75, 102
LweI	GCATC	1 cut(s)	38
MaeII	ACGT	3 cut(s)	145, 206, 219
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	5 cut(s)	20, 60, 154, 163, 191
MslI	CAYNNNNRTG	2 cut(s)	75, 77
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	5 cut(s)	57, 88, 94, 103, 112
NlaIII	CATG	2 cut(s)	122, 203
NlaIV	GGNNCC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	122
OliI	CACNNNNGTG	2 cut(s)	75, 77
PaeI	GCATGC	1 cut(s)	122
PkrI	GCNGC	5 cut(s)	34, 53, 90, 117, 239
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Ppu21I	YACGTR	2 cut(s)	146, 220
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	252
PstI	CTGCAG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	2 cut(s)	75, 77
SatI	GCNGC	5 cut(s)	33, 52, 89, 116, 238
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	9 cut(s)	112, 117, 148, 153, 160, 165, 183, 209, 222
SfaNI	GCATC	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	75, 77
SnaBI	TACGTA	1 cut(s)	146
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	3 cut(s)	148, 209, 222
TaqI	TCGA	1 cut(s)	209
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	20
TauI	GCSGC	1 cut(s)	240
TscAI	CASTG	1 cut(s)	104
TseI	GCWGC	4 cut(s)	32, 51, 88, 115
TspRI	CASTG	1 cut(s)	104
VneI	GTGCAC	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.