Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

1926317 .. 1926598

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG027700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCCAAGTACAAGGACCTCAACCCCGTCTGGAACGAGCCACTCGAGTTCGTCGTCTCCGACCCGGACAACATGGACTACGAGGAGCTTGAGATCGAGGTCCTCAATGACAAGCGCTACGGCAACAGCGGCACGGCGCGTAAGAACCACTTCCTCGGCAGGGTCAAGCTCTATGGCACACAGTTTGCCAAGTGCGGCGACGAGGGTTTGGTGTATTTCCAGCTCGAGAAGAAGAGCGTGTTCAGTTGGATTAGAGGCGAAATCGGGCTCAGAATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

93

Amino Acids

10.88

Weight (kDa)

5.38

Isoelectric Point (pI)

19.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	4 - 57	2.5e-07	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	139
AciI	CCGC	2 cut(s)	129, 195
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	160
AluBI	AGCT	3 cut(s)	88, 169, 223
AluI	AGCT	3 cut(s)	88, 169, 223
Alw26I	GTCTC	1 cut(s)	61
Ama87I	CYCGRG	2 cut(s)	44, 224
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	2 cut(s)	117, 139
AspS9I	GGNCC	2 cut(s)	16, 100
AsuC2I	CCSGG	1 cut(s)	65
AvaI	CYCGRG	2 cut(s)	44, 224
AvaII	GGWCC	2 cut(s)	16, 100
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	270
BceAI	ACGGC	2 cut(s)	136, 150
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	2 cut(s)	130, 196
BlsI	GCNGC	2 cut(s)	131, 197
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	2 cut(s)	16, 100
BmeT110I	CYCGRG	2 cut(s)	44, 224
BmgT120I	GGNCC	2 cut(s)	16, 100
BmrFI	CCNGG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	2 cut(s)	44, 224
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	44, 224
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	2 cut(s)	129, 195
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	117, 139
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	2 cut(s)	117, 139
Cfr13I	GGNCC	2 cut(s)	16, 100
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	6 cut(s)	5, 40, 88, 169, 223, 268
CviKI_1	RGCY	6 cut(s)	5, 40, 88, 169, 223, 268
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	16, 100
Eco47III	AGCGCT	1 cut(s)	116
Eco88I	CYCGRG	2 cut(s)	44, 224
EcoO109I	RGGNCCY	2 cut(s)	16, 100
EcoT38I	GRGCYC	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 174
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	130, 196
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	130, 196
GlaI	GCGC	2 cut(s)	116, 138
GluI	GCNGC	2 cut(s)	130, 196
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	2 cut(s)	117, 139
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	2 cut(s)	115, 137
HinP1I	GCGC	2 cut(s)	115, 137
HpaII	CCGG	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	61, 272
Hpy188III	TCNNGA	2 cut(s)	31, 226
Hpy99I	CGWCG	2 cut(s)	56, 203
HpyCH4III	ACNGT	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	2 cut(s)	115, 137
Kzo9I	GATC	1 cut(s)	93
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	16, 78, 145, 233
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	2 cut(s)	241, 244
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	84, 227
MnlI	CCTC	7 cut(s)	29, 76, 91, 113, 164, 196, 248
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	280
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	135
PaeR7I	CTCGAG	2 cut(s)	44, 224
PciSI	GCTCTTC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 51, 57
PdmI	GAANNNNTTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	131, 197
PpuMI	RGGWCCY	2 cut(s)	16, 100
Psp5II	RGGWCCY	2 cut(s)	16, 100
PspPI	GGNCC	2 cut(s)	16, 100
PspPPI	RGGWCCY	2 cut(s)	16, 100
PspXI	VCTCGAGB	1 cut(s)	44
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	2 cut(s)	130, 196
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	2 cut(s)	16, 100
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	5 cut(s)	21, 90, 102, 171, 225
Sfr274I	CTCGAG	2 cut(s)	44, 224
SinI	GGWCC	2 cut(s)	16, 100
SlaI	CTCGAG	2 cut(s)	44, 224
SmlI	CTYRAG	3 cut(s)	44, 89, 224
SmoI	CTYRAG	3 cut(s)	44, 89, 224
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	2 cut(s)	129, 195
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	45, 96, 225
TasI	AATT	1 cut(s)	273
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	2 cut(s)	132, 198
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	16, 100
XapI	RAATTY	1 cut(s)	273
XhoI	CTCGAG	2 cut(s)	44, 224
XmnI	GAANNNNTTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.