Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

54693933 .. 54694214

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG346300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCCAAGTACAAGGACCTCAACCCCGTCTGGAATGAGCCGCTCAAGTTTTTCGTCTCCGACCTGGACAACATGGACTACGAGGATCTCGAGATCGAGGTCCTCAACGACAAGCACTACTGCAACAGCGGCACAGTGCGTAAGAACCACTTCCTCGGCAAGGCCAAGCTTTACGGCACACAGTTTGCCAAGCTCGGCGACGAGGGTTTGGTGTATTTCCAGCTCGAGAAGAAGAGCGTGTTCAGTTGGATTAGAGGCGAAATTGGGCTCAGAATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

93

Amino Acids

10.94

Weight (kDa)

6.08

Isoelectric Point (pI)

20.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	4 - 58	8e-07	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	2 cut(s)	41, 129
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	169, 193, 223
AluI	AGCT	3 cut(s)	169, 193, 223
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	93
Ama87I	CYCGRG	2 cut(s)	89, 224
AoxI	GGCC	2 cut(s)	3, 162
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	16, 100
AvaI	CYCGRG	2 cut(s)	89, 224
AvaII	GGWCC	2 cut(s)	16, 100
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	41, 130
BlsI	GCNGC	2 cut(s)	42, 131
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	2 cut(s)	16, 100
BmeT110I	CYCGRG	2 cut(s)	89, 224
BmgT120I	GGNCC	2 cut(s)	16, 100
BmrFI	CCNGG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	5, 164
BsiHKCI	CYCGRG	2 cut(s)	89, 224
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	5, 164
BsoBI	CYCGRG	2 cut(s)	89, 224
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	85, 93
BspACI	CCGC	2 cut(s)	41, 129
BspANI	GGCC	2 cut(s)	5, 164
BspCNI	CTCAG	1 cut(s)	282
BspPI	GGATC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	85, 93
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	136, 183
Bst6I	CTCTTC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstKTI	GATC	2 cut(s)	88, 96
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	85, 93
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	5, 164
BtsIMutI	CAGTG	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	16, 100
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	7 cut(s)	5, 40, 164, 169, 193, 223, 268
CviKI_1	RGCY	7 cut(s)	5, 40, 164, 169, 193, 223, 268
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	87, 95
DpnII	GATC	2 cut(s)	85, 93
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	16, 100
Eco88I	CYCGRG	2 cut(s)	89, 224
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	2 cut(s)	16, 100
EcoRII	CCWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	76
FaiI	YATR	1 cut(s)	74
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	41, 130
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	41, 130
GluI	GCNGC	2 cut(s)	41, 130
HaeIII	GGCC	2 cut(s)	5, 164
Hin1II	CATG	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	61, 272
Hpy188III	TCNNGA	4 cut(s)	31, 89, 91, 226
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	136, 183
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	85, 93
LguI	GCTCTTC	1 cut(s)	227
LpnPI	CCDG	4 cut(s)	16, 50, 77, 233
MalI	GATC	2 cut(s)	87, 95
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	2 cut(s)	85, 93
MboII	GAAGA	2 cut(s)	241, 244
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	261, 273
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	84, 227
MnlI	CCTC	7 cut(s)	29, 76, 91, 113, 164, 196, 248
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	280
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeII	GATC	2 cut(s)	85, 93
NlaIII	CATG	1 cut(s)	76
NmeAIII	GCCGAG	2 cut(s)	135, 174
PaeR7I	CTCGAG	2 cut(s)	89, 224
PciSI	GCTCTTC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	42, 131
PpuMI	RGGWCCY	2 cut(s)	16, 100
Psp5II	RGGWCCY	2 cut(s)	16, 100
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	16, 100
PspPPI	RGGWCCY	2 cut(s)	16, 100
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	2 cut(s)	41, 130
Sau3AI	GATC	2 cut(s)	85, 93
Sau96I	GGNCC	2 cut(s)	16, 100
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	6 cut(s)	21, 66, 102, 171, 195, 225
Sfr274I	CTCGAG	2 cut(s)	89, 224
SinI	GGWCC	2 cut(s)	16, 100
SlaI	CTCGAG	2 cut(s)	89, 224
SmlI	CTYRAG	3 cut(s)	44, 89, 224
SmoI	CTYRAG	3 cut(s)	44, 89, 224
Sse9I	AATT	2 cut(s)	261, 273
SsiI	CCGC	2 cut(s)	41, 129
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	136, 183
TaqI	TCGA	3 cut(s)	90, 96, 225
TasI	AATT	2 cut(s)	261, 273
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	2 cut(s)	43, 132
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TscAI	CASTG	1 cut(s)	141
TspRI	CASTG	1 cut(s)	141
VpaK11BI	GGWCC	2 cut(s)	16, 100
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	273
XhoI	CTCGAG	2 cut(s)	89, 224
XmnI	GAANNNNTTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.