Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Reverse (-)

21343550 .. 21346961

Gene Structure 3412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGGACGGTCACGATCTGGAAGTGGAGAAGGCTCGATTGCTGAGCTTAGCTCTCGATTCCGGGTTCGATGAAGAATCGGCGAACAAGTGCTTGGATCGTCTGGTCAATCTCTACGGTGACGATGGCCTGGATTTTATTACCGTGGAGCACTGCGGCGATGATTATCTCACGGCACTGGCGGAATCTGTGCAAGACACGGAAGAATGGGATGATATACAAGCAATGGAATCTGAAGCTTGTGGAGCTTTGAGTAACATGTTTGGGAGAGACATTCCGAATGCAGTCGAAGCAGATAATGATGGGGACAATATCAACATGGTAGAAGATTCACCCGAACGTGAAGAATACCCAAATTTTATGGTGTTGGATTCTAGTGATAGTGAAGAATTAGAGTTTAGAACTCCAATGAGAAAAAAAGTTGGATCAAATCCCTCTTCAGTGGATTGCAAAAGCACCATTAGTCGAGATTCAGTTCCAACAATTTCTAGTAAGAAGCAGTGCACCCGAATGTCAAAAGATGAAGTGAAAACTCTCGGTTATGAAGAATTACAGGCTTTGGATGATGCTGAGCTGGCCAATGTTGTAATATTTGGTAATAGGGTATTTCGACCCTTGCAGCATCAAGCATGTAAAGCGGCTATGGAAAAGCGAGATTGCTTTATCCTAATGCCTACCGGAGGGGGCAAAAGCTTGTGTTACCAGCTTCCAGCGACCCTGAAAGCAGGTGTGACAATTGTCGTATCTCCACTGCTTTCCCTTATTCAGGATCAGATAGTAACGCTGAACCTCAAATTCGGTGTACCAGCAACTTTTTTGAATTCTCAACAAACTGCTTCCCAAGCAGCGGCTGTCCTCCAAGAGCTAAGGAAAGCTAAACCATCATGCAAGCTTTTGTATGTGACTCCCGAGAGAGTTGTTGGTAACCCTACTTTTCTTGATGCCCTGAAATGCCTGCATTCAAAGGGGCAGCTAGCAGGATTTGTTGTGGACGAAGCGCACTGTGTAAGCCAATGGGGACATGATTTCCGTCCAGATTACAGGGGATTAGGATGTCTTAAGCAGATATTCCGTGATGTTCCAGTGATGGCATTAACTGCCACAGCAACTCATTCTGTTCGTGAGGACATTTTAAAAGCTTTAAGAATTCCACATGCTCTTGTCCTCGAAAGAAGTTTTGACAGGCCCAACTTGAAATATGAAGTCATTGGTAAGACCAAGGAATCACAGAAGCAGCTTGGAGAGCTACTGAGGAGTCGTTTCCAAAACCAGTCCGGAATTGTATACTGCCTTTCAAAAAGTGAATGTGTTGAGGTATCCAAATTTTTGAATGAAAAATTTAAGATCAAGACAGCATATTATCATGCTGGGATTGCTGCTCGCCAAAGAGTTGCTGTGCAAAAGAAATGGTACACAGGAGAGGTTCAAATCATATGCGCCACAATTGCTTTTGGGATGGGAATTGACAAACCGGATGTTCGTTTTGTCATCCACAATACGATATCCAAATCAGTAGAAAGCTATTATCAAGAATCTGGAAGGGCTGGTAGAGATGATCTTCCTGCAGTATGCATTGTTCTATACCAGAAGAAGGATTTTAGCCGGGTTGTATGCATGTTACGTAACGGTCAAGGATGTAAGAGCCAAAGTTTCAAGACATCTATGGCTCAAGCTCAGAAAATGCAAGAGTACTGTGAATTAAAGACTCAATGCCGGAGACAAATGCTACTCAAACACTTTGGAGAGTCTTTTGACGAAAACGCCTGCAAGTATGGTTCCAATCCTTGTGATAACTGTGTCAAGGCTTCCTCTCGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

606

Amino Acids

67.6

Weight (kDa)

6.09

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	203 - 373	6.5e-24	DEAD/DEAH box helicase
Helicase_C	PF00271	410 - 516	2e-18	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	530 - 598	1.8e-13	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	713
Acc36I	ACCTGC	1 cut(s)	713
AccI	GTMKAC	1 cut(s)	1281
AccIII	TCCGGA	1 cut(s)	1271
AciI	CCGC	4 cut(s)	153, 179, 635, 845
AclWI	GGATC	3 cut(s)	102, 430, 774
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	6 cut(s)	352, 791, 817, 1143, 1319, 1334
AcuI	CTGAAG	2 cut(s)	252, 420
AfaI	GTAC	3 cut(s)	801, 1409, 1688
AfiI	CCNNNNNNNGG	4 cut(s)	677, 763, 844, 1588
AflII	CTTAAG	1 cut(s)	1055
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	7 cut(s)	817, 960, 1192, 1293, 1327, 1424, 1651
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
Alw21I	GWGCWC	2 cut(s)	150, 503
Alw26I	GTCTC	2 cut(s)	261, 1708
Alw44I	GTGCAC	1 cut(s)	499
AlwI	GGATC	3 cut(s)	102, 430, 774
AlwNI	CAGNNNCTG	1 cut(s)	848
Ama87I	CYCGRG	1 cut(s)	905
Aor13HI	TCCGGA	1 cut(s)	1271
AoxI	GGCC	3 cut(s)	124, 573, 1181
ApaLI	GTGCAC	1 cut(s)	499
ApeKI	GCWGC	5 cut(s)	616, 842, 967, 1231, 1373
ApoI	RAATTY	6 cut(s)	352, 791, 817, 1143, 1319, 1334
AspLEI	GCGC	2 cut(s)	997, 1436
AspS9I	GGNCC	1 cut(s)	1182
AsuC2I	CCSGG	2 cut(s)	61, 1601
AsuHPI	GGTGA	2 cut(s)	128, 321
AsuNHI	GCTAGC	1 cut(s)	970
AvaI	CYCGRG	1 cut(s)	905
BaeGI	GKGCMC	1 cut(s)	503
BalI	TGGCCA	1 cut(s)	575
Bbv12I	GWGCWC	2 cut(s)	150, 503
BbvI	GCAGC	5 cut(s)	628, 854, 979, 1243, 1360
BccI	CCATC	5 cut(s)	116, 293, 886, 1078, 1447
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	1324
BcnI	CCSGG	2 cut(s)	61, 1601
BcoDI	GTCTC	2 cut(s)	261, 1708
BfaI	CTAG	3 cut(s)	372, 486, 971
BfmI	CTRYAG	1 cut(s)	1560
BfrI	CTTAAG	1 cut(s)	1055
BfuAI	ACCTGC	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	1324
BisI	GCNGC	8 cut(s)	154, 617, 636, 843, 846, 968, 1232, 1374
BlpI	GCTNAGC	3 cut(s)	41, 46, 567
BlsI	GCNGC	8 cut(s)	155, 618, 637, 844, 847, 969, 1233, 1375
BmcAI	AGTACT	1 cut(s)	1688
Bme1390I	CCNGG	3 cut(s)	61, 128, 1601
BmeT110I	CYCGRG	1 cut(s)	905
BmgT120I	GGNCC	1 cut(s)	1182
BmiI	GGNNCC	1 cut(s)	1774
BmrFI	CCNGG	3 cut(s)	61, 128, 1601
BmsI	GCATC	3 cut(s)	553, 628, 928
BmtI	GCTAGC	1 cut(s)	974
BoxI	GACNNNNGTC	1 cut(s)	734
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
Bpu10I	CCTNAGC	1 cut(s)	863
Bpu1102I	GCTNAGC	3 cut(s)	41, 46, 567
BpuEI	CTTGAG	1 cut(s)	1650
BpuMI	CCSGG	2 cut(s)	61, 1601
BsaAI	YACGTR	1 cut(s)	1619
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	141, 1215
BsaWI	WCCGGW	3 cut(s)	674, 1271, 1468
Bsc4I	CCNNNNNNNGG	4 cut(s)	677, 763, 844, 1588
Bse1I	ACTGG	3 cut(s)	180, 1079, 1267
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	162
BseAI	TCCGGA	1 cut(s)	1271
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	141, 1215
BseGI	GGATG	7 cut(s)	214, 565, 1055, 1458, 1477, 1485, 1637
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	4 cut(s)	677, 763, 844, 1588
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	4 cut(s)	32, 558, 1238, 1685
BseNI	ACTGG	3 cut(s)	180, 1079, 1267
BseRI	GAGGAG	1 cut(s)	1264
BseSI	GKGCMC	1 cut(s)	503
BseXI	GCAGC	5 cut(s)	628, 854, 979, 1243, 1360
BseYI	CCCAGC	1 cut(s)	1364
BshFI	GGCC	3 cut(s)	126, 575, 1183
BsiHKAI	GWGCWC	2 cut(s)	150, 503
BsiHKCI	CYCGRG	1 cut(s)	905
BsiSI	CCGG	6 cut(s)	60, 675, 1272, 1469, 1600, 1711
BslFI	GGGAC	2 cut(s)	317, 1029
BslI	CCNNNNNNNGG	4 cut(s)	677, 763, 844, 1588
BsmAI	GTCTC	2 cut(s)	261, 1708
BsmFI	GGGAC	2 cut(s)	317, 1029
BsmI	GAATGC	2 cut(s)	283, 955
BsnI	GGCC	3 cut(s)	126, 575, 1183
BsoBI	CYCGRG	1 cut(s)	905
Bsp1286I	GDGCHC	2 cut(s)	150, 503
Bsp13I	TCCGGA	1 cut(s)	1271
Bsp143I	GATC	6 cut(s)	13, 94, 422, 766, 1341, 1552
Bsp1720I	GCTNAGC	3 cut(s)	41, 46, 567
BspACI	CCGC	4 cut(s)	153, 179, 635, 845
BspANI	GGCC	3 cut(s)	126, 575, 1183
BspCNI	CTCAG	4 cut(s)	33, 559, 1239, 1684
BspEI	TCCGGA	1 cut(s)	1271
BspLI	GGNNCC	1 cut(s)	1774
BspMAI	CTGCAG	1 cut(s)	1564
BspMI	ACCTGC	1 cut(s)	713
BspOI	GCTAGC	1 cut(s)	974
BspPI	GGATC	3 cut(s)	102, 430, 774
BspTI	CTTAAG	1 cut(s)	1055
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	180, 1079, 1267
BssECI	CCNNGG	2 cut(s)	141, 1215
BssMI	GATC	6 cut(s)	13, 94, 422, 766, 1341, 1552
BssNAI	GTATAC	1 cut(s)	1282
BssT1I	CCWWGG	1 cut(s)	1215
Bst1107I	GTATAC	1 cut(s)	1282
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	7 cut(s)	8, 116, 142, 1001, 1625, 1691, 1793
Bst6I	CTCTTC	1 cut(s)	439
BstAFI	CTTAAG	1 cut(s)	1055
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstBAI	YACGTR	1 cut(s)	1619
BstC8I	GCNNGC	6 cut(s)	573, 887, 953, 972, 1378, 1762
BstDEI	CTNAG	6 cut(s)	41, 46, 567, 863, 1247, 1671
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	920
BstENI	CCTNNNNNAGG	2 cut(s)	675, 761
BstF5I	GGATG	7 cut(s)	214, 565, 1055, 1458, 1477, 1485, 1637
BstHHI	GCGC	2 cut(s)	997, 1436
BstKTI	GATC	6 cut(s)	16, 97, 425, 769, 1344, 1555
BstMAI	GTCTC	2 cut(s)	261, 1708
BstMBI	GATC	6 cut(s)	13, 94, 422, 766, 1341, 1552
BstMWI	GCNNNNNNNGC	9 cut(s)	242, 287, 572, 632, 839, 1094, 1240, 1370, 1442
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	4 cut(s)	259, 630, 1154, 1615
BstPAI	GACNNNNGTC	1 cut(s)	734
BstPI	GGTNACC	1 cut(s)	920
BstSCI	CCNGG	3 cut(s)	59, 126, 1599
BstSFI	CTRYAG	1 cut(s)	1560
BstSLI	GKGCMC	1 cut(s)	503
BstSNI	TACGTA	1 cut(s)	1619
BstV1I	GCAGC	5 cut(s)	628, 854, 979, 1243, 1360
BstZ17I	GTATAC	1 cut(s)	1282
BsuI	GTATCC	1 cut(s)	1324
BsuRI	GGCC	3 cut(s)	126, 575, 1183
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	7 cut(s)	214, 565, 1055, 1458, 1477, 1485, 1637
BtsI	GCAGTG	3 cut(s)	148, 503, 746
BtsIMutI	CAGTG	7 cut(s)	148, 173, 444, 503, 746, 997, 1086
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	6 cut(s)	573, 887, 953, 972, 1378, 1762
CaiI	CAGNNNCTG	1 cut(s)	848
CfoI	GCGC	2 cut(s)	997, 1436
Cfr13I	GGNCC	1 cut(s)	1182
Csp6I	GTAC	3 cut(s)	800, 1408, 1687
CviAII	CATG	8 cut(s)	256, 316, 627, 882, 1019, 1151, 1361, 1612
CviQI	GTAC	3 cut(s)	800, 1408, 1687
DdeI	CTNAG	6 cut(s)	41, 46, 567, 863, 1247, 1671
DpnI	GATC	6 cut(s)	15, 96, 424, 768, 1343, 1554
DpnII	GATC	6 cut(s)	13, 94, 422, 766, 1341, 1552
DraI	TTTAAA	1 cut(s)	1131
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
EciI	GGCGGA	1 cut(s)	194
Eco105I	TACGTA	1 cut(s)	1619
Eco130I	CCWWGG	1 cut(s)	1215
Eco32I	GATATC	1 cut(s)	1500
Eco57I	CTGAAG	2 cut(s)	252, 420
Eco88I	CYCGRG	1 cut(s)	905
Eco91I	GGTNACC	1 cut(s)	920
EcoNI	CCTNNNNNAGG	2 cut(s)	675, 761
EcoO65I	GGTNACC	1 cut(s)	920
EcoRI	GAATTC	2 cut(s)	817, 1143
EcoRII	CCWGG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	1500
EcoT14I	CCWWGG	1 cut(s)	1215
EcoT22I	ATGCAT	2 cut(s)	1571, 1613
ErhI	CCWWGG	1 cut(s)	1215
FaeI	CATG	8 cut(s)	259, 319, 630, 885, 1022, 1154, 1364, 1615
FaqI	GGGAC	2 cut(s)	317, 1029
FatI	CATG	8 cut(s)	255, 315, 626, 881, 1018, 1150, 1360, 1611
FauNDI	CATATG	1 cut(s)	1430
FblI	GTMKAC	1 cut(s)	1281
Fnu4HI	GCNGC	8 cut(s)	154, 617, 636, 843, 846, 968, 1232, 1374
FokI	GGATG	7 cut(s)	221, 572, 1062, 1465, 1472, 1484, 1644
Fsp4HI	GCNGC	8 cut(s)	154, 617, 636, 843, 846, 968, 1232, 1374
FspBI	CTAG	3 cut(s)	372, 486, 971
GlaI	GCGC	2 cut(s)	996, 1435
GluI	GCNGC	8 cut(s)	154, 617, 636, 843, 846, 968, 1232, 1374
GsaI	CCCAGC	1 cut(s)	1368
HaeIII	GGCC	3 cut(s)	126, 575, 1183
HapII	CCGG	6 cut(s)	60, 675, 1272, 1469, 1600, 1711
HhaI	GCGC	2 cut(s)	997, 1436
Hin1II	CATG	8 cut(s)	259, 319, 630, 885, 1022, 1154, 1364, 1615
Hin6I	GCGC	2 cut(s)	995, 1434
HinP1I	GCGC	2 cut(s)	995, 1434
HindIII	AAGCTT	4 cut(s)	234, 688, 887, 1134
HpaII	CCGG	6 cut(s)	60, 675, 1272, 1469, 1600, 1711
HphI	GGTGA	2 cut(s)	128, 321
Hpy166II	GTNNAC	5 cut(s)	501, 800, 988, 1282, 1410
Hpy188I	TCNGA	4 cut(s)	232, 276, 771, 1674
Hpy8I	GTNNAC	5 cut(s)	501, 800, 988, 1282, 1410
HpyAV	CCTTC	3 cut(s)	22, 1530, 1582
HpyCH4III	ACNGT	7 cut(s)	8, 116, 142, 1001, 1625, 1691, 1793
HpyCH4IV	ACGT	2 cut(s)	337, 1618
HpyF10VI	GCNNNNNNNGC	9 cut(s)	242, 287, 572, 632, 839, 1094, 1240, 1370, 1442
HpyF3I	CTNAG	6 cut(s)	41, 46, 567, 863, 1247, 1671
HpySE526I	ACGT	2 cut(s)	337, 1618
Hsp92II	CATG	8 cut(s)	259, 319, 630, 885, 1022, 1154, 1364, 1615
HspAI	GCGC	2 cut(s)	995, 1434
Kpn2I	TCCGGA	1 cut(s)	1271
Kzo9I	GATC	6 cut(s)	13, 94, 422, 766, 1341, 1552
LmnI	GCTCC	2 cut(s)	145, 242
Lsp1109I	GCAGC	5 cut(s)	628, 854, 979, 1243, 1360
LweI	GCATC	3 cut(s)	553, 628, 928
MaeI	CTAG	3 cut(s)	372, 486, 971
MaeII	ACGT	2 cut(s)	337, 1618
MalI	GATC	6 cut(s)	15, 96, 424, 768, 1343, 1554
MboI	GATC	6 cut(s)	13, 94, 422, 766, 1341, 1552
MboII	GAAGA	9 cut(s)	83, 212, 335, 353, 395, 426, 554, 1547, 1597
MfeI	CAATTG	2 cut(s)	732, 1440
MhlI	GDGCHC	2 cut(s)	150, 503
MlsI	TGGCCA	1 cut(s)	575
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	4 cut(s)	895, 1261, 1696, 1751
MmeI	TCCRAC	3 cut(s)	345, 400, 500
Mox20I	TGGCCA	1 cut(s)	575
Mph1103I	ATGCAT	2 cut(s)	1571, 1613
MroI	TCCGGA	1 cut(s)	1271
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	6 cut(s)	1056, 1091, 1130, 1139, 1338, 1697
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	845
MspCI	CTTAAG	1 cut(s)	1055
MspI	CCGG	6 cut(s)	60, 675, 1272, 1469, 1600, 1711
MspR9I	CCNGG	3 cut(s)	61, 128, 1601
MunI	CAATTG	2 cut(s)	732, 1440
Mva1269I	GAATGC	2 cut(s)	283, 955
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	9 cut(s)	242, 287, 572, 632, 839, 1094, 1240, 1370, 1442
NciI	CCSGG	2 cut(s)	61, 1601
NdeI	CATATG	1 cut(s)	1430
NdeII	GATC	6 cut(s)	13, 94, 422, 766, 1341, 1552
NheI	GCTAGC	1 cut(s)	970
NlaIII	CATG	8 cut(s)	259, 319, 630, 885, 1022, 1154, 1364, 1615
NlaIV	GGNNCC	1 cut(s)	1774
NmuCI	GTSAC	4 cut(s)	8, 116, 727, 898
NsiI	ATGCAT	2 cut(s)	1571, 1613
NspI	RCATGY	4 cut(s)	259, 630, 1154, 1615
PaqCI	CACCTGC	1 cut(s)	713
PciI	ACATGT	1 cut(s)	255
PctI	GAATGC	2 cut(s)	283, 955
PfeI	GAWTC	9 cut(s)	56, 74, 182, 227, 326, 368, 467, 1220, 1529
PkrI	GCNGC	8 cut(s)	155, 618, 637, 844, 847, 969, 1233, 1375
PleI	GAGTC	4 cut(s)	895, 1260, 1696, 1750
PpsI	GAGTC	4 cut(s)	895, 1260, 1696, 1750
Ppu21I	YACGTR	1 cut(s)	1619
PscI	ACATGT	1 cut(s)	255
PshAI	GACNNNNGTC	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	126
PspEI	GGTNACC	1 cut(s)	920
PspFI	CCCAGC	1 cut(s)	1364
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	1774
PspPI	GGNCC	1 cut(s)	1182
PsrI	GAACNNNNNNTAC	2 cut(s)	1557, 1589
PstI	CTGCAG	1 cut(s)	1564
PstNI	CAGNNNCTG	1 cut(s)	848
RsaI	GTAC	3 cut(s)	801, 1409, 1688
RsaNI	GTAC	3 cut(s)	800, 1408, 1687
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	6 cut(s)	1056, 1091, 1130, 1139, 1338, 1697
SatI	GCNGC	8 cut(s)	154, 617, 636, 843, 846, 968, 1232, 1374
Sau3AI	GATC	6 cut(s)	13, 94, 422, 766, 1341, 1552
Sau96I	GGNCC	1 cut(s)	1182
ScaI	AGTACT	1 cut(s)	1688
SchI	GAGTC	4 cut(s)	895, 1261, 1696, 1751
ScrFI	CCNGG	3 cut(s)	61, 128, 1601
SduI	GDGCHC	2 cut(s)	150, 503
SfaNI	GCATC	3 cut(s)	553, 628, 928
SfcI	CTRYAG	1 cut(s)	1560
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	1055, 1665
SmoI	CTYRAG	2 cut(s)	1055, 1665
SnaBI	TACGTA	1 cut(s)	1619
SsiI	CCGC	4 cut(s)	153, 179, 635, 845
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	3 cut(s)	372, 486, 971
StyD4I	CCNGG	3 cut(s)	59, 126, 1599
StyI	CCWWGG	1 cut(s)	1215
TaaI	ACNGT	7 cut(s)	8, 116, 142, 1001, 1625, 1691, 1793
TaiI	ACGT	2 cut(s)	340, 1621
TaqI	TCGA	8 cut(s)	34, 54, 66, 285, 463, 607, 1164, 1810
TatI	WGTACW	1 cut(s)	1686
TauI	GCSGC	3 cut(s)	156, 638, 848
TfiI	GAWTC	9 cut(s)	56, 74, 182, 227, 326, 368, 467, 1220, 1529
Tru1I	TTAA	6 cut(s)	1056, 1091, 1130, 1139, 1338, 1697
Tru9I	TTAA	6 cut(s)	1056, 1091, 1130, 1139, 1338, 1697
TscAI	CASTG	7 cut(s)	155, 180, 444, 503, 753, 1004, 1086
TseFI	GTSAC	4 cut(s)	8, 116, 727, 898
TseI	GCWGC	5 cut(s)	616, 842, 967, 1231, 1373
Tsp45I	GTSAC	4 cut(s)	8, 116, 727, 898
TspDTI	ATGAA	5 cut(s)	84, 534, 555, 1212, 1344
TspGWI	ACGGA	3 cut(s)	212, 1016, 1058
TspRI	CASTG	7 cut(s)	155, 180, 444, 503, 753, 1004, 1086
Vha464I	CTTAAG	1 cut(s)	1055
VneI	GTGCAC	1 cut(s)	499
XagI	CCTNNNNNAGG	2 cut(s)	675, 761
XapI	RAATTY	6 cut(s)	352, 791, 817, 1143, 1319, 1334
XceI	RCATGY	4 cut(s)	259, 630, 1154, 1615
XmiI	GTMKAC	1 cut(s)	1281
XspI	CTAG	3 cut(s)	372, 486, 971
ZrmI	AGTACT	1 cut(s)	1688
Zsp2I	ATGCAT	2 cut(s)	1571, 1613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.