Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Forward (+)

22853820 .. 22863959

Gene Structure 10140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2931 bp

ATGGGCGTCCCTGCGTTTTACCGCTGGCTAGCGGATCGGTACCCGCAGTCCATCGCCGACGTCGTGGAGGAGCATCCTAGAGAGGACTTCAATGGCGTCCCATTGCCAGTCGACGTCTCCAGACCAAATCCTAACGGATATGAGTTCGACAACTTGTACCTTGACATGAACAACATTATACATCCATGCTTTCATCCGGACGGCAAGCCTCCCCCCTCAACCTATAATGATGTATTCAAATCAGTATTTGATTACATTGATCATCTGTTCACATTGGTTCGACCAAGAAAGCTTCTTTTTTTGGCAATTGATGGGGTTGCTCCAAGAGCTAAAATGAATCAGCAACGTTCTCGACGTTTCCGAGCTGCAAAAGATGCGGCTGAAGCGGAAGCTGAAGAGGAAAGACTGAAGAAAGAATTTGAGATGGAGGGGGCATATTTGGTTCCTAAAGAGAAACCTGAAACTTCGGACTCAAATGTTATAACCCCTGGCACTCAATTTATGGCAGTGCTCTCGGTGGCACTTCAATATTACATACAAAGCAGGTTGAACCACAACCCTGGTTGGCAGTCTACGAAGGTTATGCTTTCTGATTCGAATGTTCCTGGCGAGGGAGAGCACAAAATAATGTCATACATCCGACTGCAACGCAACCTCCCTGGTTTTGATCCTAACACTCGGCATTGTCTTTATGGTTTGGATGCAGATCTGATTATGCTGGCTTTAGCTACACATGAGGTTCACTTCTCAATATTAAGAGAGGTGATTACATTTCCAGGCCAACAAGAAAAATGTTTTCTTTGTGGACAAGTTGGTCATCTGGCAGCTGAGTGTCGTGGTGTACCTGATGATAATGGAAATGTGGTTGATAAAACACCAATTCACCAGAAAAAATATCAGTTCCTCAATGTATGGGTATTGCGTGAATATTTGCAATATGAGCTGGACATTCCCAACCCTCCTTTTCCGCTCAATTTTGAAAGGATGGTGGATGATTTTGTTTTTATGTGTTTTTTTGTTGGCAATGACTTTCTTCCACATATGCCAACATTGGAGATCAGAGAGGGTGCTATTAATTTATTGATGCATATTTATAGAAAGGAGTTTACTGCTATGGGAGGTTATCTTACTGATGCGGGTGAGGTATTGTTAAACAGAGTGGAGCATTTTATTCAGTCTGTTGCTGTTTTTGAACAACAAATTTTTCAAAAGCGGGTTCGAATTCAGCAGGCTATTGAGAATAATGAAGATAGACATAGAGCTAGAAGAGAAACTTCAGCAGAGGTACCGGCTCCGGTGATAGACAAGGTTAAATTGGGAGAGCCTGGATACACAGAAAGGTATTATGCTGAGAAATTTCAAGTATCAAAACCAGAGGAGATTGATAAAGTCAAAAAGGACTTGGTTTTAAAATATGTAGAAGGCTTATGTTGGGTTTGCCGATATTATTACCAAGGAGTCTGCTCATGGCAATGGTATTATCCATACCATTATGCTCCTTTTGCCTCTGATCTGAAAGATTTAGATGAATTGGAAATAACATTTTTCTTGGGAGAGCCATTTAAGCCCTTCGATCAGCTCATGGGAACCTTACCAGCCGCAAGCTCCAGTGCTCTTCCGGAAAAATACAGAAATTTGATGAGTGATCCAAGATCTCCTATCCATGATTTCTACCCTGCTGATTTTGAAATTGACATGAATGGCAAGCGCTTTGCGTGGCAGGGTGTTGCCAAATTGCCATTCATTGACGAGAAGAAATTGCTTACGGAGACAAGGAAGCTTGAAAGCACTTTAACGGAGGAAGAGCAGGCTCGGAATAGCATAATGCTTGATTTGCTTTATGTTTGTAGTTCTCATCCTTTGGCAGCACACATCAGTATGTACTACCAACTGTGTTATCAGACACCCCCACATGAAAGATGTTTATGGATCATAGACACAATTACTAGTGGTGGAATGAATGGATTCCTTTGGTTATCCGAGAGAAATGGCGTTAGACATGTAATCCCTTCCCCTGTTCATGGTTATCCAAACCTTCATTATAACCAAGTCCTAAATGTTACATATCTTAACCCCACAGCTCATACACACATTCCAGTACCTCCCGAGGGTGCGATAATGCCCAGAAAGGTTGTAAGACCTACGGACATCAAACCATTCCCTACGCTATGGCACGACGAAGGTCCTCGACGCCAAGGTAGAGAGAGGCCACAAATACCTGGAGCAATTGCTGGATCCATCTTGGGAGAAGCAGCTCATCGACTAGTCAAGAACACCCTTAATATTAGACCTAATAGTTCATCCTCCGGATTTTGGGATCAACCGACATTACGAAATTCCGGAAACTTTGCAGGAAATTATCCAGTCAACCGACCAAGACCAGCTGGGCCCTCTGGGTATGAAAGTGGCTTCCGCGAAGAAGCAAAGTACGGAAATTCCTTCAATCCTCAGGTCATGATGACTAGGCCTAGATTTCCCACATCAAATGGTATGCAAGGTGACAGACAGAATTTTAGGGCACAAGAAAGAGTACAATATCAAGAACAGAGTTTTAGGACACAAGAGAGAGTACAATATCAAGAACAGTACCACAACCTGAGAACCGCGATGTCTAGTTTAACAGTTCAAGGCAGTGTGAGAACCAGGTCACCTGCAGTGGCACCACCGGGGATGCCAAATTCAGGATACCAAGCAAACCATCAGCACCTGTTTGTGCAGAACATGGGTGCTCTTCCTTCGCCACCTACCAAGTGGATTAGCAAAGAACCAACTGGAAATGGTGGATTATATGTAAGGCAACAGGAAACTGGATATGGCGGAGCATATGAGCAACCGCAGGTCGAGAAGGTCTATCAAGTTAAGACGCGTGCTCCCCAGGATGTATCAGACCGTGGAGACCAGAGCGGGAGTGATTCTTCAGGATTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

977

Amino Acids

111.7

Weight (kDa)

6.34

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 254	2.2e-98	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	324 - 426	8.2e-42	Xrn1 helical domain
XRN_M	PF17846	434 - 717	7.6e-115	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	482, 2043
AarI	CACCTGC	1 cut(s)	2659
AasI	GACNNNNNNGTC	1 cut(s)	813
AatII	GACGTC	2 cut(s)	63, 117
Acc36I	ACCTGC	3 cut(s)	534, 2659, 2827
Acc65I	GGTACC	2 cut(s)	39, 1285
AccB1I	GGYRCC	3 cut(s)	39, 1285, 2659
AccBSI	CCGCTC	2 cut(s)	970, 2904
AccI	GTMKAC	2 cut(s)	111, 572
AccII	CGCG	3 cut(s)	2415, 2606, 2866
AccIII	TCCGGA	4 cut(s)	196, 1618, 2306, 2339
AclI	AACGTT	1 cut(s)	346
AclWI	GGATC	7 cut(s)	42, 662, 1640, 1937, 2229, 2242, 2325
AcsI	RAATTY	9 cut(s)	416, 1200, 1221, 1355, 1633, 2335, 2434, 2509, 2677
AcuI	CTGAAG	5 cut(s)	402, 414, 428, 1260, 2901
AcyI	GRCGYC	5 cut(s)	6, 60, 96, 114, 2191
AfeI	AGCGCT	1 cut(s)	1709
AfiI	CCNNNNNNNGG	5 cut(s)	611, 2021, 2108, 2313, 2681
AflIII	ACRYGT	2 cut(s)	1999, 2864
AhlI	ACTAGT	2 cut(s)	1946, 2263
AjnI	CCWGG	9 cut(s)	487, 559, 604, 658, 775, 1324, 2218, 2642, 2874
AjuI	GAANNNNNNNTTGG	2 cut(s)	1724, 1756
Alw21I	GWGCWC	5 cut(s)	513, 621, 1615, 2731, 2872
Alw26I	GTCTC	3 cut(s)	121, 1763, 2889
AlwI	GGATC	7 cut(s)	42, 662, 1640, 1937, 2229, 2242, 2325
AlwNI	CAGNNNCTG	1 cut(s)	2707
Ama87I	CYCGRG	1 cut(s)	2105
Aor13HI	TCCGGA	4 cut(s)	196, 1618, 2306, 2339
Aor51HI	AGCGCT	1 cut(s)	1709
AoxI	GGCC	4 cut(s)	778, 2207, 2387, 2465
ApaI	GGGCCC	1 cut(s)	2391
ApeKI	GCWGC	4 cut(s)	365, 824, 1865, 2252
ApoI	RAATTY	9 cut(s)	416, 1200, 1221, 1355, 1633, 2335, 2434, 2509, 2677
AseI	ATTAAT	1 cut(s)	1074
Asp700I	GAANNNNTTC	1 cut(s)	1964
Asp718I	GGTACC	2 cut(s)	39, 1285
AspLEI	GCGC	1 cut(s)	1710
AspS9I	GGNCC	3 cut(s)	2183, 2387, 2388
AsuC2I	CCSGG	1 cut(s)	2667
AsuHPI	GGTGA	6 cut(s)	775, 875, 1151, 1309, 2510, 2640
AsuII	TTCGAA	2 cut(s)	596, 1219
AsuNHI	GCTAGC	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	2105
AvaII	GGWCC	1 cut(s)	2183
AxyI	CCTNAGG	1 cut(s)	2448
BaeGI	GKGCMC	2 cut(s)	2391, 2521
BamHI	GGATCC	1 cut(s)	2234
BanI	GGYRCC	3 cut(s)	39, 1285, 2659
BanII	GRGCYC	1 cut(s)	2391
Bbv12I	GWGCWC	5 cut(s)	513, 621, 1615, 2731, 2872
BbvI	GCAGC	4 cut(s)	352, 836, 1877, 2264
BccI	CCATC	6 cut(s)	59, 305, 418, 979, 2246, 2706
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	6 cut(s)	332, 366, 495, 529, 565, 599
BciT130I	CCWGG	9 cut(s)	489, 561, 606, 660, 777, 1326, 2220, 2644, 2876
BciVI	GTATCC	2 cut(s)	1322, 2678
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	2667
BcoDI	GTCTC	3 cut(s)	121, 1763, 2889
BcuI	ACTAGT	2 cut(s)	1946, 2263
BfaI	CTAG	8 cut(s)	29, 78, 1263, 1947, 2264, 2463, 2469, 2613
BfmI	CTRYAG	1 cut(s)	2652
BfoI	RGCGCY	1 cut(s)	1711
BfuAI	ACCTGC	3 cut(s)	534, 2659, 2827
BfuI	GTATCC	2 cut(s)	1322, 2678
BglII	AGATCT	2 cut(s)	706, 1652
BisI	GCNGC	6 cut(s)	366, 378, 825, 1599, 1866, 2253
BlsI	GCNGC	6 cut(s)	367, 379, 826, 1600, 1867, 2254
Bme18I	GGWCC	1 cut(s)	2183
BmeT110I	CYCGRG	1 cut(s)	2105
BmgT120I	GGNCC	3 cut(s)	2183, 2387, 2388
BmiI	GGNNCC	8 cut(s)	41, 444, 1287, 1293, 1588, 2236, 2389, 2661
BmsI	GCATC	6 cut(s)	82, 364, 691, 1074, 1123, 2661
BmtI	GCTAGC	1 cut(s)	32
BoxI	GACNNNNGTC	1 cut(s)	2181
BpmI	CTGGAG	3 cut(s)	103, 1591, 2241
Bpu14I	TTCGAA	2 cut(s)	596, 1219
BpuMI	CCSGG	1 cut(s)	2667
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	5 cut(s)	6, 60, 96, 114, 2191
BsaI	GGTCTC	1 cut(s)	2889
BsaJI	CCNNGG	9 cut(s)	487, 559, 658, 1453, 2106, 2194, 2666, 2874, 2890
BsaWI	WCCGGW	5 cut(s)	196, 1294, 1618, 2306, 2339
BsaXI	ACNNNNNCTCC	4 cut(s)	639, 669, 2854, 2884
Bsc4I	CCNNNNNNNGG	5 cut(s)	611, 2021, 2108, 2313, 2681
Bse118I	RCCGGY	1 cut(s)	1288
Bse1I	ACTGG	6 cut(s)	107, 1608, 2096, 2363, 2776, 2812
Bse21I	CCTNAGG	1 cut(s)	2448
Bse3DI	GCAATG	3 cut(s)	101, 1030, 1478
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	4 cut(s)	196, 1618, 2306, 2339
BseBI	CCWGG	9 cut(s)	489, 561, 606, 660, 777, 1326, 2220, 2644, 2876
BseDI	CCNNGG	9 cut(s)	487, 559, 658, 1453, 2106, 2194, 2666, 2874, 2890
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	5 cut(s)	611, 2021, 2108, 2313, 2681
BseMI	GCAATG	3 cut(s)	101, 1030, 1478
BseMII	CTCAG	4 cut(s)	819, 1341, 2462, 2588
BseNI	ACTGG	6 cut(s)	107, 1608, 2096, 2363, 2776, 2812
BseRI	GAGGAG	2 cut(s)	83, 1391
BseSI	GKGCMC	2 cut(s)	2391, 2521
BseXI	GCAGC	4 cut(s)	352, 836, 1877, 2264
BseYI	CCCAGC	1 cut(s)	2384
BsgI	GTGCAG	1 cut(s)	2735
Bsh1236I	CGCG	3 cut(s)	2415, 2606, 2866
BshFI	GGCC	4 cut(s)	780, 2209, 2389, 2467
BshNI	GGYRCC	3 cut(s)	39, 1285, 2659
BsiHKAI	GWGCWC	5 cut(s)	513, 621, 1615, 2731, 2872
BsiHKCI	CYCGRG	1 cut(s)	2105
BsiSI	CCGG	7 cut(s)	197, 1289, 1295, 1619, 2307, 2340, 2666
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	5 cut(s)	611, 2021, 2108, 2313, 2681
BsmAI	GTCTC	3 cut(s)	121, 1763, 2889
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	4 cut(s)	780, 2209, 2389, 2467
Bso31I	GGTCTC	1 cut(s)	2889
BsoBI	CYCGRG	1 cut(s)	2105
Bsp119I	TTCGAA	2 cut(s)	596, 1219
Bsp120I	GGGCCC	1 cut(s)	2387
Bsp1286I	GDGCHC	7 cut(s)	513, 621, 1615, 2391, 2521, 2731, 2872
Bsp13I	TCCGGA	4 cut(s)	196, 1618, 2306, 2339
BspANI	GGCC	4 cut(s)	780, 2209, 2389, 2467
BspCNI	CTCAG	4 cut(s)	820, 1342, 2461, 2589
BspEI	TCCGGA	4 cut(s)	196, 1618, 2306, 2339
BspFNI	CGCG	3 cut(s)	2415, 2606, 2866
BspHI	TCATGA	1 cut(s)	2454
BspLI	GGNNCC	8 cut(s)	41, 444, 1287, 1293, 1588, 2236, 2389, 2661
BspMAI	CTGCAG	1 cut(s)	2656
BspMI	ACCTGC	3 cut(s)	534, 2659, 2827
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	7 cut(s)	42, 662, 1640, 1937, 2229, 2242, 2325
BspQI	GCTCTTC	3 cut(s)	1620, 1797, 2736
BspT104I	TTCGAA	2 cut(s)	596, 1219
BspT107I	GGYRCC	3 cut(s)	39, 1285, 2659
BspTNI	GGTCTC	1 cut(s)	2889
BsrBI	CCGCTC	2 cut(s)	970, 2904
BsrDI	GCAATG	3 cut(s)	101, 1030, 1478
BsrFI	RCCGGY	1 cut(s)	1288
BsrI	ACTGG	6 cut(s)	107, 1608, 2096, 2363, 2776, 2812
BssAI	RCCGGY	1 cut(s)	1288
BssECI	CCNNGG	9 cut(s)	487, 559, 658, 1453, 2106, 2194, 2666, 2874, 2890
BssNI	GRCGYC	5 cut(s)	6, 60, 96, 114, 2191
BssT1I	CCWWGG	2 cut(s)	1453, 2194
Bst2UI	CCWGG	9 cut(s)	489, 561, 606, 660, 777, 1326, 2220, 2644, 2876
Bst4CI	ACNGT	4 cut(s)	1893, 2586, 2623, 2891
Bst6I	CTCTTC	5 cut(s)	390, 1261, 1620, 1797, 2736
BstACI	GRCGYC	5 cut(s)	6, 60, 96, 114, 2191
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBI	TTCGAA	2 cut(s)	596, 1219
BstC8I	GCNNGC	9 cut(s)	26, 30, 206, 720, 1230, 1603, 1706, 1809, 2868
BstDEI	CTNAG	4 cut(s)	828, 1350, 2448, 2597
BstDSI	CCRYGG	1 cut(s)	2890
BstEII	GGTNACC	1 cut(s)	2646
BstFNI	CGCG	3 cut(s)	2415, 2606, 2866
BstH2I	RGCGCY	1 cut(s)	1711
BstHHI	GCGC	1 cut(s)	1710
BstMAI	GTCTC	3 cut(s)	121, 1763, 2889
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 374, 383, 940, 1502, 1564, 1834
BstNI	CCWGG	9 cut(s)	489, 561, 606, 660, 777, 1326, 2220, 2644, 2876
BstNSI	RCATGY	1 cut(s)	2003
BstPAI	GACNNNNGTC	1 cut(s)	2181
BstPI	GGTNACC	1 cut(s)	2646
BstSFI	CTRYAG	1 cut(s)	2652
BstSLI	GKGCMC	2 cut(s)	2391, 2521
BstUI	CGCG	3 cut(s)	2415, 2606, 2866
BstV1I	GCAGC	4 cut(s)	352, 836, 1877, 2264
BstX2I	RGATCY	3 cut(s)	706, 1652, 2234
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	3 cut(s)	706, 1652, 2234
Bsu36I	CCTNAGG	1 cut(s)	2448
BsuI	GTATCC	2 cut(s)	1322, 2678
BsuRI	GGCC	4 cut(s)	780, 2209, 2389, 2467
BtgI	CCRYGG	1 cut(s)	2890
BtgZI	GCGATG	2 cut(s)	37, 2621
BtsI	GCAGTG	3 cut(s)	513, 2638, 2661
BtsIMutI	CAGTG	4 cut(s)	513, 1615, 2638, 2661
BveI	ACCTGC	3 cut(s)	534, 2659, 2827
Cac8I	GCNNGC	9 cut(s)	26, 30, 206, 720, 1230, 1603, 1706, 1809, 2868
CaiI	CAGNNNCTG	1 cut(s)	2707
CciI	TCATGA	1 cut(s)	2454
CfoI	GCGC	1 cut(s)	1710
Cfr10I	RCCGGY	1 cut(s)	1288
Cfr13I	GGNCC	3 cut(s)	2183, 2387, 2388
CseI	GACGC	3 cut(s)	85, 2199, 2872
CsiI	ACCWGGT	1 cut(s)	2642
DdeI	CTNAG	4 cut(s)	828, 1350, 2448, 2597
DraI	TTTAAA	1 cut(s)	1410
DrdI	GACNNNNNNGTC	1 cut(s)	813
DseDI	GACNNNNNNGTC	1 cut(s)	813
Eam1104I	CTCTTC	5 cut(s)	390, 1261, 1620, 1797, 2736
EarI	CTCTTC	5 cut(s)	390, 1261, 1620, 1797, 2736
EciI	GGCGGA	1 cut(s)	2832
Eco130I	CCWWGG	2 cut(s)	1453, 2194
Eco147I	AGGCCT	1 cut(s)	2467
Eco24I	GRGCYC	1 cut(s)	2391
Eco31I	GGTCTC	1 cut(s)	2889
Eco47I	GGWCC	1 cut(s)	2183
Eco47III	AGCGCT	1 cut(s)	1709
Eco57I	CTGAAG	5 cut(s)	402, 414, 428, 1260, 2901
Eco81I	CCTNAGG	1 cut(s)	2448
Eco88I	CYCGRG	1 cut(s)	2105
Eco91I	GGTNACC	1 cut(s)	2646
EcoO109I	RGGNCCY	2 cut(s)	2183, 2388
EcoO65I	GGTNACC	1 cut(s)	2646
EcoRI	GAATTC	1 cut(s)	1221
EcoRII	CCWGG	9 cut(s)	487, 559, 604, 658, 775, 1324, 2218, 2642, 2874
EcoT14I	CCWWGG	2 cut(s)	1453, 2194
EcoT22I	ATGCAT	1 cut(s)	1089
EcoT38I	GRGCYC	1 cut(s)	2391
ErhI	CCWWGG	2 cut(s)	1453, 2194
Esp3I	CGTCTC	1 cut(s)	121
FalI	AAGNNNNNCTT	2 cut(s)	1258, 1290
FaqI	GGGAC	1 cut(s)	83
FauI	CCCGC	4 cut(s)	51, 1129, 1206, 2897
FauNDI	CATATG	2 cut(s)	1041, 2824
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	2 cut(s)	111, 572
Fnu4HI	GCNGC	6 cut(s)	366, 378, 825, 1599, 1866, 2253
FriOI	GRGCYC	1 cut(s)	2391
Fsp4HI	GCNGC	6 cut(s)	366, 378, 825, 1599, 1866, 2253
FspBI	CTAG	8 cut(s)	29, 78, 1263, 1947, 2264, 2463, 2469, 2613
GlaI	GCGC	1 cut(s)	1709
GluI	GCNGC	6 cut(s)	366, 378, 825, 1599, 1866, 2253
GsaI	CCCAGC	1 cut(s)	2388
GsuI	CTGGAG	3 cut(s)	103, 1591, 2241
HaeII	RGCGCY	1 cut(s)	1711
HaeIII	GGCC	4 cut(s)	780, 2209, 2389, 2467
HapII	CCGG	7 cut(s)	197, 1289, 1295, 1619, 2307, 2340, 2666
HgaI	GACGC	3 cut(s)	85, 2199, 2872
HhaI	GCGC	1 cut(s)	1710
Hin1I	GRCGYC	5 cut(s)	6, 60, 96, 114, 2191
Hin6I	GCGC	1 cut(s)	1708
HinP1I	GCGC	1 cut(s)	1708
HincII	GTYRAC	2 cut(s)	112, 2368
HindII	GTYRAC	2 cut(s)	112, 2368
HindIII	AAGCTT	2 cut(s)	290, 1778
HinfI	GANTC	6 cut(s)	337, 470, 593, 1458, 1965, 2912
HpaII	CCGG	7 cut(s)	197, 1289, 1295, 1619, 2307, 2340, 2666
HphI	GGTGA	6 cut(s)	775, 875, 1151, 1309, 2510, 2640
Hpy166II	GTNNAC	8 cut(s)	112, 270, 573, 742, 806, 842, 1107, 2368
Hpy8I	GTNNAC	8 cut(s)	112, 270, 573, 742, 806, 842, 1107, 2368
Hpy99I	CGWCG	6 cut(s)	62, 65, 116, 357, 2180, 2193
HpyAV	CCTTC	9 cut(s)	571, 1415, 1579, 2019, 2045, 2174, 2449, 2745, 2839
HpyCH4III	ACNGT	4 cut(s)	1893, 2586, 2623, 2891
HpyCH4IV	ACGT	4 cut(s)	60, 114, 346, 355
HpyCH4V	TGCA	9 cut(s)	368, 646, 704, 934, 1087, 2351, 2494, 2654, 2716
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 374, 383, 940, 1502, 1564, 1834
HpyF3I	CTNAG	4 cut(s)	828, 1350, 2448, 2597
HpySE526I	ACGT	4 cut(s)	60, 114, 346, 355
Hsp92I	GRCGYC	5 cut(s)	6, 60, 96, 114, 2191
HspAI	GCGC	1 cut(s)	1708
Kpn2I	TCCGGA	4 cut(s)	196, 1618, 2306, 2339
KpnI	GGTACC	2 cut(s)	43, 1289
Ksp22I	TGATCA	1 cut(s)	259
LguI	GCTCTTC	3 cut(s)	1620, 1797, 2736
LmnI	GCTCC	9 cut(s)	70, 325, 1162, 1297, 1501, 1610, 2222, 2819, 2875
Lsp1109I	GCAGC	4 cut(s)	352, 836, 1877, 2264
LweI	GCATC	6 cut(s)	82, 364, 691, 1074, 1123, 2661
MabI	ACCWGGT	1 cut(s)	2642
MaeI	CTAG	8 cut(s)	29, 78, 1263, 1947, 2264, 2463, 2469, 2613
MaeII	ACGT	4 cut(s)	60, 114, 346, 355
MaeIII	GTNAC	3 cut(s)	2059, 2498, 2646
MbiI	CCGCTC	2 cut(s)	970, 2904
MfeI	CAATTG	2 cut(s)	306, 2226
MflI	RGATCY	3 cut(s)	706, 1652, 2234
MhlI	GDGCHC	7 cut(s)	513, 621, 1615, 2391, 2521, 2731, 2872
MluI	ACGCGT	1 cut(s)	2864
MlyI	GAGTC	2 cut(s)	464, 1467
MmeI	TCCRAC	1 cut(s)	664
Mph1103I	ATGCAT	1 cut(s)	1089
MroI	TCCGGA	4 cut(s)	196, 1618, 2306, 2339
MroXI	GAANNNNTTC	1 cut(s)	1964
MslI	CAYNNNNRTG	2 cut(s)	1471, 1877
MspA1I	CMGCKG	3 cut(s)	24, 827, 2384
MspI	CCGG	7 cut(s)	197, 1289, 1295, 1619, 2307, 2340, 2666
MunI	CAATTG	2 cut(s)	306, 2226
MvaI	CCWGG	9 cut(s)	489, 561, 606, 660, 777, 1326, 2220, 2644, 2876
MvnI	CGCG	3 cut(s)	2415, 2606, 2866
MwoI	GCNNNNNNNGC	7 cut(s)	326, 374, 383, 940, 1502, 1564, 1834
NciI	CCSGG	1 cut(s)	2667
NdeI	CATATG	2 cut(s)	1041, 2824
NheI	GCTAGC	1 cut(s)	28
NlaIV	GGNNCC	8 cut(s)	41, 444, 1287, 1293, 1588, 2236, 2389, 2661
NmeAIII	GCCGAG	1 cut(s)	658
NmuCI	GTSAC	2 cut(s)	2498, 2646
NsiI	ATGCAT	1 cut(s)	1089
NspI	RCATGY	1 cut(s)	2003
NspV	TTCGAA	2 cut(s)	596, 1219
PagI	TCATGA	1 cut(s)	2454
PaqCI	CACCTGC	1 cut(s)	2659
PceI	AGGCCT	1 cut(s)	2467
PciI	ACATGT	1 cut(s)	1999
PciSI	GCTCTTC	3 cut(s)	1620, 1797, 2736
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 352, 358
PdmI	GAANNNNTTC	1 cut(s)	1964
PfeI	GAWTC	4 cut(s)	337, 593, 1965, 2912
PkrI	GCNGC	6 cut(s)	367, 379, 826, 1600, 1867, 2254
PleI	GAGTC	2 cut(s)	464, 1466
PpsI	GAGTC	2 cut(s)	464, 1466
PpuMI	RGGWCCY	1 cut(s)	2183
PscI	ACATGT	1 cut(s)	1999
PshAI	GACNNNNGTC	1 cut(s)	2181
PshBI	ATTAAT	1 cut(s)	1074
PsiI	TTATAA	2 cut(s)	482, 2043
Psp1406I	AACGTT	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	2183
Psp6I	CCWGG	9 cut(s)	487, 559, 604, 658, 775, 1324, 2218, 2642, 2874
PspEI	GGTNACC	1 cut(s)	2646
PspFI	CCCAGC	1 cut(s)	2384
PspGI	CCWGG	9 cut(s)	487, 559, 604, 658, 775, 1324, 2218, 2642, 2874
PspN4I	GGNNCC	8 cut(s)	41, 444, 1287, 1293, 1588, 2236, 2389, 2661
PspOMI	GGGCCC	1 cut(s)	2387
PspPI	GGNCC	3 cut(s)	2183, 2387, 2388
PspPPI	RGGWCCY	1 cut(s)	2183
PstI	CTGCAG	1 cut(s)	2656
PstNI	CAGNNNCTG	1 cut(s)	2707
PsuI	RGATCY	3 cut(s)	706, 1652, 2234
PvuII	CAGCTG	2 cut(s)	827, 2384
RseI	CAYNNNNRTG	2 cut(s)	1471, 1877
SalI	GTCGAC	1 cut(s)	110
SapI	GCTCTTC	3 cut(s)	1620, 1797, 2736
SatI	GCNGC	6 cut(s)	366, 378, 825, 1599, 1866, 2253
Sau96I	GGNCC	3 cut(s)	2183, 2387, 2388
SchI	GAGTC	2 cut(s)	464, 1467
SduI	GDGCHC	7 cut(s)	513, 621, 1615, 2391, 2521, 2731, 2872
SexAI	ACCWGGT	1 cut(s)	2642
SfaNI	GCATC	6 cut(s)	82, 364, 691, 1074, 1123, 2661
SfcI	CTRYAG	1 cut(s)	2652
SfuI	TTCGAA	2 cut(s)	596, 1219
SinI	GGWCC	1 cut(s)	2183
SmiMI	CAYNNNNRTG	2 cut(s)	1471, 1877
SpeI	ACTAGT	2 cut(s)	1946, 2263
SseBI	AGGCCT	1 cut(s)	2467
SspI	AATATT	4 cut(s)	530, 753, 929, 2284
SspMI	CTAG	8 cut(s)	29, 78, 1263, 1947, 2264, 2463, 2469, 2613
StuI	AGGCCT	1 cut(s)	2467
StyI	CCWWGG	2 cut(s)	1453, 2194
TaaI	ACNGT	4 cut(s)	1893, 2586, 2623, 2891
TaiI	ACGT	4 cut(s)	63, 117, 349, 358
TatI	WGTACW	3 cut(s)	1881, 2530, 2569
TauI	GCSGC	2 cut(s)	380, 1601
TfiI	GAWTC	4 cut(s)	337, 593, 1965, 2912
TscAI	CASTG	4 cut(s)	513, 1615, 2638, 2661
TseFI	GTSAC	2 cut(s)	2498, 2646
TseI	GCWGC	4 cut(s)	365, 824, 1865, 2252
Tsp45I	GTSAC	2 cut(s)	2498, 2646
TspGWI	ACGGA	5 cut(s)	150, 1781, 1811, 2159, 2445
TspRI	CASTG	4 cut(s)	513, 1615, 2638, 2661
VpaK11BI	GGWCC	1 cut(s)	2183
VspI	ATTAAT	1 cut(s)	1074
XapI	RAATTY	9 cut(s)	416, 1200, 1221, 1355, 1633, 2335, 2434, 2509, 2677
XceI	RCATGY	1 cut(s)	2003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2748
XmiI	GTMKAC	2 cut(s)	111, 572
XmnI	GAANNNNTTC	1 cut(s)	1964
XspI	CTAG	8 cut(s)	29, 78, 1263, 1947, 2264, 2463, 2469, 2613
ZraI	GACGTC	2 cut(s)	61, 115
Zsp2I	ATGCAT	1 cut(s)	1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.