pycom13g01690
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
1114136 .. 1119077
4942 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01690.2

Sequence Viewer

Length: 1788 bp
ATGTCGCTCTGGGAAGCTCTTCCGACGGTCGCCGTGGTCGGAGGCCAGAGTTCCGGAAAATCGTCGGTTTTGGAAAGCGTCGTTGGGAGAGATTTCTTGCCTCGTGGCTCCGGTATTGTGACGAGGAGACCATTAGTGTTGCAACTTCATAAGATAGACGAGGGACGGTCTGAATATGCAGAGTTTCTTCATTGTTCTAAGAAGAAATTCACTGATTTTGCTTCTGTACGTAAGGAGATCTCGGATGAGACTGATCGTATAACTGGGAAGACAAAACACATCTCTAACATTCCAATTCATCTCAGCATATATTCTCCAAATGTTGTAAACTTAACCCTTATCGATCTTCCTGGATTGACAAAGGTGGCTGTAGAGGGACAACCAGACACCATTGTTGAGGATATTGAGAATATGGTCCGTTCTTATGTTGAGAAGCCTAACTGCATTATATTGGCTATATCTCCTGCTAATCAAGATATTGCCACTTCAGATGCCATCAAACTTGCAAGAGAAGTCGACCCTTCAGGTGAAAGAACATTTGGAGTGCTAACAAAACTTGATCTGATGGACAAGGGAACCAATGCTCTGGATGTTATAGAAGGAAGGTCATATAGACTGCAACACCCATGGGTAGGAATTGTGAATCGTTCACAAGCTGATATCAATAAGAACGTTGATATGATTGCTGCTCGTCGTAAGGAGCAAGAATACTTTGAAACTAGTCCTGAATATGGGCACTTGGCGCACAAAATGGGTTCAGAGTATCTTGCCAAACTTTTGTCTAAGCATTTGGAGGTTGTCATTAGGCAACGGATACCTAGCATCATTGCTTTGATAAACAAGACAATTGATGAGCTTAATGCAGAGCTGGATCGTATTGGCAGGCCAATTGGTGTAGATTCAGGGGCCCAGCTGTACACTATTTTAGAATTATGTCGTGCATTTGACCGTGTATTTAAGGAACACCTGGATGGAGGGCGGCCTGGTGGAGATCGTATATATAAAGTTTTTGACCATCAATTACCAGCTGCTTTGAAAAAGCTTCCCCTTGATCGTCATCTCTCTATAAAGAATGTCCAAAAAGTTGTTACTGAGGCTGATGGTTATCAGCCCCATTTGATTGCTCCAGAACAAGGATACCGAAGACTCATTGATGGATCTATCGTCTATTTCAAAGGACCAGCTGAAGCCTCTGTAGATGCAGTGCACTTTGTTTTGAAAGAACTTGTACGGAAGTCAATAGCTGAAACCGAGGAATTGAAGCGATTCCCTACACTTCAGTCTGATATAGCAGCAGCTTCCACAGAAGCGTTGGAAAGGTTTCGTGATGAAAGCAGGAAAACTGTTACACGACTGGTGGAAATGGAATCTAGCTATCTAACAGTGGAATTTTTTAGAAAGCTTAATTCAGAACCCGAAAGAACTCCAGGTCAAGCAGGATCAAAGGCAGATAAACACTCAAAAGAGAGAGAAATAGTGCAAAATATGGACACTTTCGGAGATAATTATCTCAGGAGGATTGCATCAAATGTCAGCTCTTACATCAATATGGTTTGTGAGACACTGAGGCTTTCGATTCCAAAGGCTGTTGTTCACTGTCAAGTTCGAGAGGCCAAGAGAAATCTGCTCAACGATTTTTATGCCCAAATTGGAAGGCAAGAGAAGGAGAGGCTTGGTGCAATGTTGGATGAGGATCCGGCACTCATGGAAAGGCGAACAAACATTGCTAAACGCCTTGAACTCTACAAGTCAGCTAGAGATGAGATTGATTCTGTCGCATGGAAATGA

Protein Analysis

596

Amino Acids

67.08

Weight (kDa)

7.26

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 516
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 1 cut(s) 979
AclI AACGTT 1 cut(s) 672
AclWI GGATC 5 cut(s) 879, 1165, 1447, 1688, 1701
AcsI RAATTY 2 cut(s) 206, 1388
AcuI CTGAAG 4 cut(s) 471, 507, 1206, 1262
AfaI GTAC 3 cut(s) 228, 917, 1230
AfiI CCNNNNNNNGG 3 cut(s) 632, 731, 1133
AgsI TTSAA 6 cut(s) 716, 1036, 1174, 1219, 1261, 1739
AhlI ACTAGT 1 cut(s) 719
AjnI CCWGG 4 cut(s) 349, 966, 982, 1426
AjuI GAANNNNNNNTTGG 4 cut(s) 66, 98, 522, 554
Alw21I GWGCWC 1 cut(s) 1209
Alw26I GTCTC 3 cut(s) 121, 242, 1553
Alw44I GTGCAC 1 cut(s) 1205
AlwI GGATC 5 cut(s) 879, 1165, 1447, 1688, 1701
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 5 cut(s) 43, 884, 906, 980, 1611
ApaI GGGCCC 1 cut(s) 910
ApaLI GTGCAC 1 cut(s) 1205
ApeKI GCWGC 4 cut(s) 686, 1028, 1292, 1295
ApoI RAATTY 2 cut(s) 206, 1388
Asp700I GAANNNNTTC 4 cut(s) 18, 206, 1265, 1320
AspLEI GCGC 1 cut(s) 745
AspS9I GGNCC 4 cut(s) 415, 906, 907, 1178
AsuHPI GGTGA 1 cut(s) 539
AvaII GGWCC 2 cut(s) 415, 1178
BaeGI GKGCMC 3 cut(s) 738, 910, 1209
BamHI GGATCC 1 cut(s) 1693
BanII GRGCYC 1 cut(s) 910
BauI CACGAG 1 cut(s) 102
BbsI GAAGAC 2 cut(s) 275, 1150
Bbv12I GWGCWC 1 cut(s) 1209
BbvI GCAGC 4 cut(s) 673, 1015, 1304, 1307
BccI CCATC 6 cut(s) 503, 559, 965, 1023, 1094, 1148
BceAI ACGGC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 1622, 1656
BciT130I CCWGG 4 cut(s) 351, 968, 984, 1428
BciVI GTATCC 2 cut(s) 807, 1130
BcoDI GTCTC 3 cut(s) 121, 242, 1553
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 4 cut(s) 720, 819, 1371, 1755
BfmI CTRYAG 2 cut(s) 369, 1194
BfuI GTATCC 2 cut(s) 807, 1130
BglII AGATCT 1 cut(s) 237
BisI GCNGC 5 cut(s) 687, 980, 1029, 1293, 1296
BlsI GCNGC 5 cut(s) 688, 981, 1030, 1294, 1297
Bme1390I CCNGG 4 cut(s) 351, 968, 984, 1428
Bme18I GGWCC 2 cut(s) 415, 1178
BmgT120I GGNCC 4 cut(s) 415, 906, 907, 1178
BmiI GGNNCC 5 cut(s) 109, 577, 907, 908, 1695
BmrFI CCNGG 4 cut(s) 351, 968, 984, 1428
BmrI ACTGGG 1 cut(s) 273
BmsI GCATC 4 cut(s) 481, 831, 1189, 1532
BmuI ACTGGG 1 cut(s) 273
BpiI GAAGAC 2 cut(s) 275, 1150
BpmI CTGGAG 2 cut(s) 1110, 1410
Bsa29I ATCGAT 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 230
BsaBI GATNNNNATC 4 cut(s) 1056, 1104, 1506, 1692
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 3 cut(s) 33, 626, 1251
BsaWI WCCGGW 2 cut(s) 53, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 731, 1133
Bse1I ACTGG 2 cut(s) 268, 1359
Bse3DI GCAATG 3 cut(s) 825, 1686, 1722
Bse8I GATNNNNATC 4 cut(s) 1056, 1104, 1506, 1692
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 4 cut(s) 351, 968, 984, 1428
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 33, 626, 1251
BseGI GGATG 4 cut(s) 250, 595, 976, 1693
BseJI GATNNNNATC 4 cut(s) 1056, 1104, 1506, 1692
BseLI CCNNNNNNNGG 3 cut(s) 632, 731, 1133
BseMI GCAATG 3 cut(s) 825, 1686, 1722
BseMII CTCAG 4 cut(s) 316, 1083, 1525, 1556
BseNI ACTGG 2 cut(s) 268, 1359
BseRI GAGGAG 1 cut(s) 139
BseSI GKGCMC 3 cut(s) 738, 910, 1209
BseXI GCAGC 4 cut(s) 673, 1015, 1304, 1307
BseYI CCCAGC 1 cut(s) 909
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 5 cut(s) 45, 886, 908, 982, 1613
BshVI ATCGAT 1 cut(s) 342
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 1209
BsiSI CCGG 3 cut(s) 54, 111, 1697
BslFI GGGAC 2 cut(s) 177, 390
BslI CCNNNNNNNGG 3 cut(s) 632, 731, 1133
BsmAI GTCTC 3 cut(s) 121, 242, 1553
BsmFI GGGAC 2 cut(s) 177, 390
BsnI GGCC 5 cut(s) 45, 886, 908, 982, 1613
Bso31I GGTCTC 1 cut(s) 121
Bsp120I GGGCCC 1 cut(s) 906
Bsp1286I GDGCHC 3 cut(s) 738, 910, 1209
Bsp13I TCCGGA 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 915
Bsp19I CCATGG 1 cut(s) 626
BspACI CCGC 1 cut(s) 979
BspANI GGCC 5 cut(s) 45, 886, 908, 982, 1613
BspCNI CTCAG 4 cut(s) 315, 1084, 1524, 1557
BspDI ATCGAT 1 cut(s) 342
BspEI TCCGGA 1 cut(s) 53
BspLI GGNNCC 5 cut(s) 109, 577, 907, 908, 1695
BspPI GGATC 5 cut(s) 879, 1165, 1447, 1688, 1701
BspQI GCTCTTC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 121
BsrDI GCAATG 3 cut(s) 825, 1686, 1722
BsrGI TGTACA 1 cut(s) 915
BsrI ACTGG 2 cut(s) 268, 1359
BssECI CCNNGG 3 cut(s) 33, 626, 1251
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 626
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 4 cut(s) 351, 968, 984, 1428
Bst4CI ACNGT 6 cut(s) 28, 168, 950, 1345, 1384, 1598
Bst6I CTCTTC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 915
BstBAI YACGTR 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 884
BstDEI CTNAG 6 cut(s) 198, 302, 783, 1092, 1511, 1565
BstDSI CCRYGG 2 cut(s) 33, 626
BstF5I GGATG 4 cut(s) 250, 595, 976, 1693
BstHHI GCGC 1 cut(s) 745
BstMAI GTCTC 3 cut(s) 121, 242, 1553
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 742
BstNI CCWGG 4 cut(s) 351, 968, 984, 1428
BstSCI CCNGG 4 cut(s) 349, 966, 982, 1426
BstSFI CTRYAG 2 cut(s) 369, 1194
BstSLI GKGCMC 3 cut(s) 738, 910, 1209
BstSNI TACGTA 1 cut(s) 230
BstV1I GCAGC 4 cut(s) 673, 1015, 1304, 1307
BstV2I GAAGAC 2 cut(s) 275, 1150
BstX2I RGATCY 3 cut(s) 237, 1157, 1693
BstXI CCANNNNNNTGG 1 cut(s) 586
BstYI RGATCY 3 cut(s) 237, 1157, 1693
Bsu15I ATCGAT 1 cut(s) 342
BsuI GTATCC 2 cut(s) 807, 1130
BsuRI GGCC 5 cut(s) 45, 886, 908, 982, 1613
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 2 cut(s) 33, 626
BtsCI GGATG 4 cut(s) 250, 595, 976, 1693
BtsI GCAGTG 1 cut(s) 1209
BtsIMutI CAGTG 5 cut(s) 210, 1209, 1389, 1562, 1594
Cac8I GCNNGC 1 cut(s) 884
CfoI GCGC 1 cut(s) 745
Cfr13I GGNCC 4 cut(s) 415, 906, 907, 1178
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 1 cut(s) 67
Csp6I GTAC 3 cut(s) 227, 916, 1229
CviAII CATG 3 cut(s) 627, 1705, 1779
CviQI GTAC 3 cut(s) 227, 916, 1229
DdeI CTNAG 6 cut(s) 198, 302, 783, 1092, 1511, 1565
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco105I TACGTA 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 626
Eco24I GRGCYC 1 cut(s) 910
Eco31I GGTCTC 1 cut(s) 121
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 2 cut(s) 415, 1178
Eco57I CTGAAG 4 cut(s) 471, 507, 1206, 1262
EcoO109I RGGNCCY 1 cut(s) 906
EcoRII CCWGG 4 cut(s) 349, 966, 982, 1426
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 626
EcoT38I GRGCYC 1 cut(s) 910
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 3 cut(s) 630, 1708, 1782
FaqI GGGAC 2 cut(s) 177, 390
FatI CATG 3 cut(s) 626, 1704, 1778
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 5 cut(s) 687, 980, 1029, 1293, 1296
FokI GGATG 4 cut(s) 257, 602, 983, 1700
FriOI GRGCYC 1 cut(s) 910
Fsp4HI GCNGC 5 cut(s) 687, 980, 1029, 1293, 1296
FspBI CTAG 4 cut(s) 720, 819, 1371, 1755
GlaI GCGC 1 cut(s) 744
GluI GCNGC 5 cut(s) 687, 980, 1029, 1293, 1296
GsaI CCCAGC 1 cut(s) 913
GsuI CTGGAG 2 cut(s) 1110, 1410
HaeIII GGCC 5 cut(s) 45, 886, 908, 982, 1613
HapII CCGG 3 cut(s) 54, 111, 1697
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 745
Hin1II CATG 3 cut(s) 630, 1708, 1782
Hin6I GCGC 1 cut(s) 743
HinP1I GCGC 1 cut(s) 743
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 2 cut(s) 1040, 1400
HinfI GANTC 7 cut(s) 643, 899, 1146, 1266, 1367, 1576, 1769
HpaII CCGG 3 cut(s) 54, 111, 1697
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 6 cut(s) 328, 517, 650, 918, 1207, 1594
Hpy188III TCNNGA 8 cut(s) 54, 473, 587, 725, 1127, 1325, 1513, 1607
Hpy8I GTNNAC 6 cut(s) 328, 517, 650, 918, 1207, 1594
Hpy99I CGWCG 4 cut(s) 28, 67, 83, 696
HpyAV CCTTC 5 cut(s) 531, 593, 597, 1647, 1657
HpyCH4III ACNGT 6 cut(s) 28, 168, 950, 1345, 1384, 1598
HpyCH4IV ACGT 2 cut(s) 229, 672
HpyF10VI GCNNNNNNNGC 1 cut(s) 742
HpyF3I CTNAG 6 cut(s) 198, 302, 783, 1092, 1511, 1565
HpySE526I ACGT 2 cut(s) 229, 672
Hsp92II CATG 3 cut(s) 630, 1708, 1782
HspAI GCGC 1 cut(s) 743
Kpn2I TCCGGA 1 cut(s) 53
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 3 cut(s) 113, 700, 1129
Lsp1109I GCAGC 4 cut(s) 673, 1015, 1304, 1307
LweI GCATC 4 cut(s) 481, 831, 1189, 1532
MaeI CTAG 4 cut(s) 720, 819, 1371, 1755
MaeII ACGT 2 cut(s) 229, 672
MaeIII GTNAC 3 cut(s) 118, 1087, 1345
MboII GAAGA 6 cut(s) 11, 179, 214, 280, 338, 1155
MfeI CAATTG 2 cut(s) 846, 888
MflI RGATCY 3 cut(s) 237, 1157, 1693
MhlI GDGCHC 3 cut(s) 738, 910, 1209
MlyI GAGTC 1 cut(s) 1140
MmeI TCCRAC 4 cut(s) 19, 47, 1293, 1665
MroI TCCGGA 1 cut(s) 53
MroXI GAANNNNTTC 4 cut(s) 18, 206, 1265, 1320
MseI TTAA 4 cut(s) 332, 858, 957, 1404
MslI CAYNNNNRTG 3 cut(s) 969, 1547, 1783
MspA1I CMGCKG 3 cut(s) 913, 1028, 1184
MspI CCGG 3 cut(s) 54, 111, 1697
MspR9I CCNGG 4 cut(s) 351, 968, 984, 1428
MunI CAATTG 2 cut(s) 846, 888
MvaI CCWGG 4 cut(s) 351, 968, 984, 1428
MwoI GCNNNNNNNGC 1 cut(s) 742
NcoI CCATGG 1 cut(s) 626
NlaIII CATG 3 cut(s) 630, 1708, 1782
NlaIV GGNNCC 5 cut(s) 109, 577, 907, 908, 1695
NmuCI GTSAC 1 cut(s) 118
PciSI GCTCTTC 1 cut(s) 24
PdmI GAANNNNTTC 4 cut(s) 18, 206, 1265, 1320
PfeI GAWTC 6 cut(s) 643, 899, 1266, 1367, 1576, 1769
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 5 cut(s) 688, 981, 1030, 1294, 1297
PleI GAGTC 1 cut(s) 1140
PpsI GAGTC 1 cut(s) 1140
Ppu21I YACGTR 1 cut(s) 230
Psp1406I AACGTT 1 cut(s) 672
Psp6I CCWGG 4 cut(s) 349, 966, 982, 1426
PspFI CCCAGC 1 cut(s) 909
PspGI CCWGG 4 cut(s) 349, 966, 982, 1426
PspN4I GGNNCC 5 cut(s) 109, 577, 907, 908, 1695
PspOMI GGGCCC 1 cut(s) 906
PspPI GGNCC 4 cut(s) 415, 906, 907, 1178
PsuI RGATCY 3 cut(s) 237, 1157, 1693
PvuII CAGCTG 3 cut(s) 913, 1028, 1184
RsaI GTAC 3 cut(s) 228, 917, 1230
RsaNI GTAC 3 cut(s) 227, 916, 1229
RseI CAYNNNNRTG 3 cut(s) 969, 1547, 1783
SalI GTCGAC 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 4 cut(s) 332, 858, 957, 1404
SatI GCNGC 5 cut(s) 687, 980, 1029, 1293, 1296
Sau96I GGNCC 4 cut(s) 415, 906, 907, 1178
SchI GAGTC 1 cut(s) 1140
ScrFI CCNGG 4 cut(s) 351, 968, 984, 1428
SduI GDGCHC 3 cut(s) 738, 910, 1209
SfaNI GCATC 4 cut(s) 481, 831, 1189, 1532
SfcI CTRYAG 2 cut(s) 369, 1194
SinI GGWCC 2 cut(s) 415, 1178
SmiMI CAYNNNNRTG 3 cut(s) 969, 1547, 1783
SnaBI TACGTA 1 cut(s) 230
SpeI ACTAGT 1 cut(s) 719
SsiI CCGC 1 cut(s) 979
SspMI CTAG 4 cut(s) 720, 819, 1371, 1755
StyD4I CCNGG 4 cut(s) 349, 966, 982, 1426
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 6 cut(s) 28, 168, 950, 1345, 1384, 1598
TaiI ACGT 2 cut(s) 232, 675
TaqI TCGA 4 cut(s) 342, 516, 1574, 1606
TatI WGTACW 1 cut(s) 915
TauI GCSGC 1 cut(s) 982
TfiI GAWTC 6 cut(s) 643, 899, 1266, 1367, 1576, 1769
Tru1I TTAA 4 cut(s) 332, 858, 957, 1404
Tru9I TTAA 4 cut(s) 332, 858, 957, 1404
TscAI CASTG 5 cut(s) 217, 1209, 1389, 1569, 1601
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 4 cut(s) 686, 1028, 1292, 1295
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 4 cut(s) 137, 179, 287, 1344
TspGWI ACGGA 3 cut(s) 407, 826, 1246
TspRI CASTG 5 cut(s) 217, 1209, 1389, 1569, 1601
VneI GTGCAC 1 cut(s) 1205
VpaK11BI GGWCC 2 cut(s) 415, 1178
XapI RAATTY 2 cut(s) 206, 1388
XcmI CCANNNNNNNNNTGG 1 cut(s) 1309
XmiI GTMKAC 1 cut(s) 516
XmnI GAANNNNTTC 4 cut(s) 18, 206, 1265, 1320
XspI CTAG 4 cut(s) 720, 819, 1371, 1755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.