Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020879.1

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 820

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 392 bp

atgtttaaggttatagaaggaagggcatatagactgcaacacccatgggttggaattgtgaaccgttctcaagctgatatcaacaagaacattgatatgatggctgctcgtaggaaggagcaggaatactttgaaaatagtcctgattatggacacttggcacatagaatggggtcagagtatctcgccaaacttttgtctaatctgatatactctatcgaccttcggatacccagtatcattgctttgataaataagaccattagtgaacttaatgcagagctggatcgcattggcaggccaattggcatagattcaggggcccaattgtacactattttagaactatgtcgtgcatttgaccgtgtattcaaggaacacctggatggagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

131

Amino Acids

15.02

Weight (kDa)

6.91

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AclWI	GGATC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	50, 149
AgsI	TTSAA	2 cut(s)	134, 373
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	2 cut(s)	74, 283
AluI	AGCT	2 cut(s)	74, 283
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	2 cut(s)	299, 321
ApaI	GGGCCC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	321, 322
BaeGI	GKGCMC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	2 cut(s)	94, 380
BciT130I	CCWGG	1 cut(s)	383
BciVI	GTATCC	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	321, 322
BmiI	GGNNCC	2 cut(s)	322, 323
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 149
Bse1I	ACTGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	50, 149
BseMI	GCAATG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	2 cut(s)	301, 323
BslI	CCNNNNNNNGG	2 cut(s)	50, 149
BsnI	GGCC	2 cut(s)	301, 323
Bsp120I	GGGCCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	44
BspANI	GGCC	2 cut(s)	301, 323
BspLI	GGNNCC	2 cut(s)	322, 323
BspPI	GGATC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	65, 365
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	299
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	301, 323
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	321, 322
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	5 cut(s)	74, 104, 283, 301, 323
CviKI_1	RGCY	5 cut(s)	74, 104, 283, 301, 323
CviQI	GTAC	1 cut(s)	331
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	325
Eco32I	GATATC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	48
FatI	CATG	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	301, 323
Hin1II	CATG	1 cut(s)	48
HinfI	GANTC	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	61, 269, 333
Hpy188I	TCNGA	3 cut(s)	178, 207, 228
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	3 cut(s)	61, 269, 333
HpyAV	CCTTC	4 cut(s)	11, 15, 109, 233
HpyCH4III	ACNGT	2 cut(s)	65, 365
HpyCH4V	TGCA	3 cut(s)	37, 278, 356
Hsp92II	CATG	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	107, 156, 247, 269, 283, 303, 368
Lsp1109I	GCAGC	1 cut(s)	91
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MfeI	CAATTG	2 cut(s)	303, 326
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	54, 303, 326
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	1 cut(s)	383
MseI	TTAA	2 cut(s)	6, 273
MslI	CAYNNNNRTG	2 cut(s)	95, 384
MspR9I	CCNGG	1 cut(s)	383
MunI	CAATTG	2 cut(s)	303, 326
MvaI	CCWGG	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	2 cut(s)	322, 323
PfeI	GAWTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	322, 323
PspOMI	GGGCCC	1 cut(s)	321
PspPI	GGNCC	2 cut(s)	321, 322
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	2 cut(s)	95, 384
SaqAI	TTAA	2 cut(s)	6, 273
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	321, 322
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	5 cut(s)	12, 76, 225, 285, 384
SmiMI	CAYNNNNRTG	2 cut(s)	95, 384
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	54, 303, 326
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	65, 365
TaqI	TCGA	1 cut(s)	219
TasI	AATT	3 cut(s)	54, 303, 326
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	6, 273
Tru9I	TTAA	2 cut(s)	6, 273
TseI	GCWGC	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.