Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Reverse (-)

55825650 .. 55830496

Gene Structure 4847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG408800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1866 bp

ATGGCCAGATTGGAGAGCTTGATCGGCCTCGTCAACCGAATCCAGCGCGCCTGCACAGCTCTCGGCGATCACGGCGGCGAGGGCATGTCCCTATGGGAAGCTCTCCCTTCCGTCGCCGTCGTCGGAGGCCAGAGTTCCGGAAAGTCTTCGGTTTTGGAAAGCGTGGTGGGGAGAGACTTCTTGCCTCGTGGATCAGGTATTGTGACGAGGAGGCCATTAGTGTTGCAGCTTCATCGGTTAGAGGACGGGCGGTCTGAATATGCAGAGTTTCTTCATGCGCCTAGGAAGAAGTATACTGATTTTGCTGCTGTACGCAAGGAGATCGCAGATGAGACTGATCGTATAACTGGCAAATCAAAGCAAATCTCTAACATCCCGATTCATCTCAGCATATATTCCCCAAATGTTGTAAACTTGACTCTCATAGATCTTCCTGGATTGACTAAGGTTGCTGTAGAGGGACAACCAGACAGCATTGTTGAGGACATTGAGAATATGGTTCGTTCTTATGTTGAGAAGCCTAACTGCATTATATTGGCTATATCTCCTGCTAATCAAGATATCGCTACTTCAGATGCCATTAAACTTGCAAGAGAAGTTGATCCATCAGGTGAAAGAACATTTGGAGTGATGACAAAACTGGATCTAATGGACAAGGGAACCAACGCTCTCGATGTTATAGAAGGAAGGGCATATAGACTGCAACACCCATGGGTTGGAATTGTGAACCGTTCTCAAGCTGATATCAACAAGAACATTGATATGATGGCTGCTCGTAGGAAGGAGCAGGAATACTTTGAAAATAGTCCTGATTATGGACACTTGGCACATAGAATGGGGTCAGAGTATCTCGCCAAACTTTTGTCTAAGCATTTGGAGACTGTCATCAGGCAGCGGATACCCAGTATCATTGCTTTGATAAATAAGACCATTAGTGAACTTAATGCAGAGCTGGATCGCATTGGCAGGCCAATTGGCATAGATTCAGGGGCCCAATTGTACACTATTTTAGAACTATGTCGTGCATTTGACCGTGTATTCAAGGAACACCTGGATGGAGGGCGACCTGGTGGAGATCGAATATACAAAGTTTTTGACCATCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTGATCGGCATCTTTCTGTAAAGAATGTCCAAAAAGTTGTTACAGAGGCTGATGGCTATCAGCCCCATTTGATTGCTCCAGAACAAGGATACCGCAGACTTATTGATGGAGCTATCGTCTATTTTAAAGGACCAGCTGAAGCCTCTGTGGATGCTGTGCACTTTGTTTTGAAAGAACTCGTACGGAAGTCAATAGCTGAGACAGAGGAATTGAGACGATTCCCTACACTTCAGTCTGACATTGCAGCAGCTTCCACAGAAGCATTGGAAAGATTCCGTGATGAAAGCAGGAAAACAATTACACGGCTGGTGGAAATGGAGTCTAGCTACCTAACGGTGGAATTTTTCAGGAAGCTTAATATGGAAGGGGACAGAAATCAAAACCAAACAGGACCAAATGCAGACAAAAATAGAAAAGAACCGCCACCAAATATGGACATGGTTGGGGATAATTATCTCAGGAGGATCGCATCAAACGTCAACTCTTATATCAATATGGTTTGTGAGACTCTGAGGAATTCGATTCCCAAGGCTGTTGTTCACTGTCAAGTTCGAGAGGCCAAAAGATCTCTGCTCAACTACTTTTACACTCAAATTGGGAGGCAAGAGAAGGAGAGGCTAGGTGCAATGTTGGATGAGGATCCAGCACTCATGGAAAAGCGAACGCTCATTGCGAAACGGCTTGAGCTGTACAAGTCAGCTAGAGATGAGATTGACTCTGTCGCATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

621

Amino Acids

69.93

Weight (kDa)

8.08

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	38 - 214	2.3e-55	Dynamin family
Dynamin_M	PF01031	222 - 490	1.2e-62	Dynamin central region
GED	PF02212	529 - 618	3.5e-24	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	293
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	5 cut(s)	75, 250, 895, 1225, 1553
AclWI	GGATC	7 cut(s)	199, 596, 651, 963, 1604, 1766, 1779
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	1472, 1648
AcuI	CTGAAG	3 cut(s)	555, 1290, 1346
AfaI	GTAC	4 cut(s)	312, 1001, 1314, 1823
AfiI	CCNNNNNNNGG	4 cut(s)	716, 815, 1217, 1468
AgsI	TTSAA	3 cut(s)	800, 1042, 1303
AhdI	GACNNNNNGTC	1 cut(s)	250
AjnI	CCWGG	3 cut(s)	433, 1050, 1066
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
Alw21I	GWGCWC	1 cut(s)	1293
Alw26I	GTCTC	6 cut(s)	168, 326, 872, 1325, 1339, 1631
Alw44I	GTGCAC	1 cut(s)	1289
AlwI	GGATC	7 cut(s)	199, 596, 651, 963, 1604, 1766, 1779
AlwNI	CAGNNNCTG	1 cut(s)	1181
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	7 cut(s)	3, 25, 127, 212, 968, 990, 1689
ApaI	GGGCCC	1 cut(s)	994
ApaLI	GTGCAC	1 cut(s)	1289
ApeKI	GCWGC	7 cut(s)	226, 305, 770, 892, 1112, 1376, 1379
ApoI	RAATTY	2 cut(s)	1472, 1648
Asp700I	GAANNNNTTC	1 cut(s)	145
AspA2I	CCTAGG	1 cut(s)	281
AspLEI	GCGC	3 cut(s)	48, 50, 280
AspS9I	GGNCC	4 cut(s)	990, 991, 1262, 1523
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	1262, 1523
AvrII	CCTAGG	1 cut(s)	281
BaeGI	GKGCMC	2 cut(s)	994, 1293
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	1771
BanII	GRGCYC	1 cut(s)	994
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	1293
BbvI	GCAGC	7 cut(s)	238, 292, 757, 904, 1099, 1388, 1391
BccI	CCATC	6 cut(s)	613, 760, 1049, 1107, 1178, 1232
BceAI	ACGGC	4 cut(s)	88, 101, 1451, 1826
BcgI	CGANNNNNNTGC	6 cut(s)	43, 77, 215, 249, 304, 338
BciT130I	CCWGG	3 cut(s)	435, 1052, 1068
BciVI	GTATCC	2 cut(s)	891, 1214
BcoDI	GTCTC	6 cut(s)	168, 326, 872, 1325, 1339, 1631
BfaI	CTAG	4 cut(s)	282, 1455, 1751, 1833
BfmI	CTRYAG	1 cut(s)	453
BfuI	GTATCC	2 cut(s)	891, 1214
BglII	AGATCT	2 cut(s)	427, 1697
BisI	GCNGC	8 cut(s)	76, 227, 306, 771, 893, 1113, 1377, 1380
BlnI	CCTAGG	1 cut(s)	281
BlsI	GCNGC	8 cut(s)	77, 228, 307, 772, 894, 1114, 1378, 1381
Bme1390I	CCNGG	3 cut(s)	435, 1052, 1068
Bme18I	GGWCC	2 cut(s)	1262, 1523
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	990, 991, 1262, 1523
BmiI	GGNNCC	4 cut(s)	661, 991, 992, 1773
BmrFI	CCNGG	3 cut(s)	435, 1052, 1068
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	4 cut(s)	565, 1150, 1273, 1610
BmuI	ACTGGG	1 cut(s)	897
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	1832, 1864
BpmI	CTGGAG	1 cut(s)	1194
BpuEI	CTTGAG	2 cut(s)	720, 1835
BsaBI	GATNNNNATC	4 cut(s)	1140, 1188, 1584, 1770
BsaJI	CCNNGG	3 cut(s)	281, 710, 1659
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	1233, 1263
Bsc4I	CCNNNNNNNGG	4 cut(s)	716, 815, 1217, 1468
Bse1I	ACTGG	3 cut(s)	352, 645, 903
Bse3DI	GCAATG	4 cut(s)	909, 1371, 1764, 1800
Bse8I	GATNNNNATC	4 cut(s)	1140, 1188, 1584, 1770
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	3 cut(s)	435, 1052, 1068
BseDI	CCNNGG	3 cut(s)	281, 710, 1659
BseGI	GGATG	4 cut(s)	372, 1060, 1288, 1771
BseJI	GATNNNNATC	4 cut(s)	1140, 1188, 1584, 1770
BseLI	CCNNNNNNNGG	4 cut(s)	716, 815, 1217, 1468
BseMI	GCAATG	4 cut(s)	909, 1371, 1764, 1800
BseMII	CTCAG	4 cut(s)	400, 1320, 1603, 1634
BseNI	ACTGG	3 cut(s)	352, 645, 903
BsePI	GCGCGC	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	223
BseSI	GKGCMC	2 cut(s)	994, 1293
BseXI	GCAGC	7 cut(s)	238, 292, 757, 904, 1099, 1388, 1391
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	7 cut(s)	5, 27, 129, 214, 970, 992, 1691
BsiHKAI	GWGCWC	1 cut(s)	1293
BsiSI	CCGG	1 cut(s)	138
BsiWI	CGTACG	1 cut(s)	1312
BslFI	GGGAC	3 cut(s)	73, 474, 1514
BslI	CCNNNNNNNGG	4 cut(s)	716, 815, 1217, 1468
BsmAI	GTCTC	6 cut(s)	168, 326, 872, 1325, 1339, 1631
BsmBI	CGTCTC	1 cut(s)	1339
BsmFI	GGGAC	3 cut(s)	73, 474, 1514
BsnI	GGCC	7 cut(s)	5, 27, 129, 214, 970, 992, 1691
Bsp120I	GGGCCC	1 cut(s)	990
Bsp1286I	GDGCHC	2 cut(s)	994, 1293
Bsp13I	TCCGGA	1 cut(s)	137
Bsp1407I	TGTACA	2 cut(s)	999, 1821
Bsp19I	CCATGG	1 cut(s)	710
BspACI	CCGC	5 cut(s)	75, 250, 895, 1225, 1553
BspANI	GGCC	7 cut(s)	5, 27, 129, 214, 970, 992, 1691
BspCNI	CTCAG	4 cut(s)	399, 1321, 1602, 1635
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	4 cut(s)	661, 991, 992, 1773
BspPI	GGATC	7 cut(s)	199, 596, 651, 963, 1604, 1766, 1779
BsrDI	GCAATG	4 cut(s)	909, 1371, 1764, 1800
BsrGI	TGTACA	2 cut(s)	999, 1821
BsrI	ACTGG	3 cut(s)	352, 645, 903
BssECI	CCNNGG	3 cut(s)	281, 710, 1659
BssHII	GCGCGC	1 cut(s)	46
BssNAI	GTATAC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	3 cut(s)	281, 710, 1659
Bst1107I	GTATAC	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	435, 1052, 1068
Bst4CI	ACNGT	5 cut(s)	731, 883, 1034, 1468, 1676
BstAUI	TGTACA	2 cut(s)	999, 1821
BstC8I	GCNNGC	3 cut(s)	48, 52, 968
BstDEI	CTNAG	6 cut(s)	386, 444, 867, 1329, 1589, 1643
BstDSI	CCRYGG	1 cut(s)	710
BstF5I	GGATG	4 cut(s)	372, 1060, 1288, 1771
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	3 cut(s)	48, 50, 280
BstMAI	GTCTC	6 cut(s)	168, 326, 872, 1325, 1339, 1631
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 56, 72, 81
BstNI	CCWGG	3 cut(s)	435, 1052, 1068
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	3 cut(s)	433, 1050, 1066
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	2 cut(s)	994, 1293
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	7 cut(s)	238, 292, 757, 904, 1099, 1388, 1391
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	4 cut(s)	427, 643, 1697, 1771
BstYI	RGATCY	4 cut(s)	427, 643, 1697, 1771
BstZ17I	GTATAC	1 cut(s)	294
BsuI	GTATCC	2 cut(s)	891, 1214
BsuRI	GGCC	7 cut(s)	5, 27, 129, 214, 970, 992, 1691
BtgI	CCRYGG	1 cut(s)	710
BtsCI	GGATG	4 cut(s)	372, 1060, 1288, 1771
BtsIMutI	CAGTG	1 cut(s)	1672
Cac8I	GCNNGC	3 cut(s)	48, 52, 968
CaiI	CAGNNNCTG	1 cut(s)	1181
CfoI	GCGC	3 cut(s)	48, 50, 280
Cfr13I	GGNCC	4 cut(s)	990, 991, 1262, 1523
CsiI	ACCWGGT	1 cut(s)	1066
Csp6I	GTAC	4 cut(s)	311, 1000, 1313, 1822
CviAII	CATG	6 cut(s)	85, 275, 711, 1570, 1783, 1857
CviQI	GTAC	4 cut(s)	311, 1000, 1313, 1822
DdeI	CTNAG	6 cut(s)	386, 444, 867, 1329, 1589, 1643
DraI	TTTAAA	2 cut(s)	1119, 1258
DriI	GACNNNNNGTC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	250
Eco130I	CCWWGG	3 cut(s)	281, 710, 1659
Eco24I	GRGCYC	1 cut(s)	994
Eco32I	GATATC	2 cut(s)	562, 745
Eco47I	GGWCC	2 cut(s)	1262, 1523
Eco57I	CTGAAG	3 cut(s)	555, 1290, 1346
EcoO109I	RGGNCCY	1 cut(s)	990
EcoRI	GAATTC	1 cut(s)	1648
EcoRII	CCWGG	3 cut(s)	433, 1050, 1066
EcoRV	GATATC	2 cut(s)	562, 745
EcoT14I	CCWWGG	3 cut(s)	281, 710, 1659
EcoT38I	GRGCYC	1 cut(s)	994
ErhI	CCWWGG	3 cut(s)	281, 710, 1659
Esp3I	CGTCTC	1 cut(s)	1339
FaeI	CATG	6 cut(s)	88, 278, 714, 1573, 1786, 1860
FaqI	GGGAC	3 cut(s)	73, 474, 1514
FatI	CATG	6 cut(s)	84, 274, 710, 1569, 1782, 1856
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	8 cut(s)	76, 227, 306, 771, 893, 1113, 1377, 1380
FokI	GGATG	4 cut(s)	359, 1067, 1295, 1778
FriOI	GRGCYC	1 cut(s)	994
Fsp4HI	GCNGC	8 cut(s)	76, 227, 306, 771, 893, 1113, 1377, 1380
FspBI	CTAG	4 cut(s)	282, 1455, 1751, 1833
GlaI	GCGC	3 cut(s)	47, 49, 279
GluI	GCNGC	8 cut(s)	76, 227, 306, 771, 893, 1113, 1377, 1380
GsuI	CTGGAG	1 cut(s)	1194
HaeIII	GGCC	7 cut(s)	5, 27, 129, 214, 970, 992, 1691
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	3 cut(s)	48, 50, 280
Hin1II	CATG	6 cut(s)	88, 278, 714, 1573, 1786, 1860
Hin6I	GCGC	3 cut(s)	46, 48, 278
HinP1I	GCGC	3 cut(s)	46, 48, 278
HincII	GTYRAC	2 cut(s)	34, 1612
HindII	GTYRAC	2 cut(s)	34, 1612
HindIII	AAGCTT	1 cut(s)	1484
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	9 cut(s)	34, 294, 412, 727, 938, 1002, 1291, 1612, 1672
Hpy188I	TCNGA	6 cut(s)	125, 256, 574, 844, 1369, 1644
Hpy188III	TCNNGA	9 cut(s)	138, 376, 557, 671, 809, 1211, 1480, 1591, 1685
Hpy8I	GTNNAC	9 cut(s)	34, 294, 412, 727, 938, 1002, 1291, 1612, 1672
Hpy99I	CGWCG	3 cut(s)	116, 122, 125
HpyAV	CCTTC	6 cut(s)	117, 677, 681, 775, 1490, 1735
HpyCH4III	ACNGT	5 cut(s)	731, 883, 1034, 1468, 1676
HpyCH4IV	ACGT	1 cut(s)	1608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 56, 72, 81
HpyF3I	CTNAG	6 cut(s)	386, 444, 867, 1329, 1589, 1643
HpySE526I	ACGT	1 cut(s)	1608
Hsp92II	CATG	6 cut(s)	88, 278, 714, 1573, 1786, 1860
HspAI	GCGC	3 cut(s)	46, 48, 278
Kpn2I	TCCGGA	1 cut(s)	137
LmnI	GCTCC	4 cut(s)	784, 1131, 1213, 1241
Lsp1109I	GCAGC	7 cut(s)	238, 292, 757, 904, 1099, 1388, 1391
LweI	GCATC	4 cut(s)	565, 1150, 1273, 1610
MabI	ACCWGGT	1 cut(s)	1066
MaeI	CTAG	4 cut(s)	282, 1455, 1751, 1833
MaeII	ACGT	1 cut(s)	1608
MaeIII	GTNAC	2 cut(s)	202, 1171
MboII	GAAGA	4 cut(s)	138, 263, 298, 422
MfeI	CAATTG	2 cut(s)	972, 995
MflI	RGATCY	4 cut(s)	427, 643, 1697, 1771
MhlI	GDGCHC	2 cut(s)	994, 1293
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	412, 1460, 1633, 1841
MmeI	TCCRAC	3 cut(s)	103, 697, 1743
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	582, 942, 1118, 1257, 1488
MslI	CAYNNNNRTG	3 cut(s)	761, 1053, 1861
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	895, 1112, 1268
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	3 cut(s)	435, 1052, 1068
MunI	CAATTG	2 cut(s)	972, 995
MvaI	CCWGG	3 cut(s)	435, 1052, 1068
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	24, 56, 72, 81
NcoI	CCATGG	1 cut(s)	710
NlaIII	CATG	6 cut(s)	88, 278, 714, 1573, 1786, 1860
NlaIV	GGNNCC	4 cut(s)	661, 991, 992, 1773
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	88
PauI	GCGCGC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	2 cut(s)	1605, 1802
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	6 cut(s)	39, 379, 983, 1350, 1404, 1654
Pfl23II	CGTACG	1 cut(s)	1312
PflFI	GACNNNGTC	1 cut(s)	1850
PflMI	CCANNNNNTGG	1 cut(s)	716
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	8 cut(s)	77, 228, 307, 772, 894, 1114, 1378, 1381
PleI	GAGTC	4 cut(s)	412, 1459, 1633, 1841
PpsI	GAGTC	4 cut(s)	412, 1459, 1633, 1841
Psp6I	CCWGG	3 cut(s)	433, 1050, 1066
PspGI	CCWGG	3 cut(s)	433, 1050, 1066
PspLI	CGTACG	1 cut(s)	1312
PspN4I	GGNNCC	4 cut(s)	661, 991, 992, 1773
PspOMI	GGGCCC	1 cut(s)	990
PspPI	GGNCC	4 cut(s)	990, 991, 1262, 1523
PstNI	CAGNNNCTG	1 cut(s)	1181
PsuI	RGATCY	4 cut(s)	427, 643, 1697, 1771
PsyI	GACNNNGTC	1 cut(s)	1850
PteI	GCGCGC	1 cut(s)	46
PvuII	CAGCTG	2 cut(s)	1112, 1268
RsaI	GTAC	4 cut(s)	312, 1001, 1314, 1823
RsaNI	GTAC	4 cut(s)	311, 1000, 1313, 1822
RseI	CAYNNNNRTG	3 cut(s)	761, 1053, 1861
SaqAI	TTAA	5 cut(s)	582, 942, 1118, 1257, 1488
SatI	GCNGC	8 cut(s)	76, 227, 306, 771, 893, 1113, 1377, 1380
Sau96I	GGNCC	4 cut(s)	990, 991, 1262, 1523
SchI	GAGTC	4 cut(s)	412, 1460, 1633, 1841
ScrFI	CCNGG	3 cut(s)	435, 1052, 1068
SduI	GDGCHC	2 cut(s)	994, 1293
SexAI	ACCWGGT	1 cut(s)	1066
SfaNI	GCATC	4 cut(s)	565, 1150, 1273, 1610
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	2 cut(s)	1262, 1523
SmiMI	CAYNNNNRTG	3 cut(s)	761, 1053, 1861
SmlI	CTYRAG	2 cut(s)	735, 1814
SmoI	CTYRAG	2 cut(s)	735, 1814
SsiI	CCGC	5 cut(s)	75, 250, 895, 1225, 1553
SspMI	CTAG	4 cut(s)	282, 1455, 1751, 1833
StyD4I	CCNGG	3 cut(s)	433, 1050, 1066
StyI	CCWWGG	3 cut(s)	281, 710, 1659
TaaI	ACNGT	5 cut(s)	731, 883, 1034, 1468, 1676
TaiI	ACGT	1 cut(s)	1611
TaqI	TCGA	4 cut(s)	672, 1078, 1652, 1684
TatI	WGTACW	2 cut(s)	999, 1821
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	6 cut(s)	39, 379, 983, 1350, 1404, 1654
Tru1I	TTAA	5 cut(s)	582, 942, 1118, 1257, 1488
Tru9I	TTAA	5 cut(s)	582, 942, 1118, 1257, 1488
TscAI	CASTG	1 cut(s)	1679
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	7 cut(s)	226, 305, 770, 892, 1112, 1376, 1379
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	4 cut(s)	221, 263, 371, 1428
TspGWI	ACGGA	3 cut(s)	100, 1330, 1397
TspRI	CASTG	1 cut(s)	1679
Tth111I	GACNNNGTC	1 cut(s)	1850
Van91I	CCANNNNNTGG	1 cut(s)	716
VneI	GTGCAC	1 cut(s)	1289
VpaK11BI	GGWCC	2 cut(s)	1262, 1523
XapI	RAATTY	2 cut(s)	1472, 1648
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1393
XmaJI	CCTAGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	145
XspI	CTAG	4 cut(s)	282, 1455, 1751, 1833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.