Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Reverse (-)

25523142 .. 25528408

Gene Structure 5267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG257800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCGTCCTACAGATTGATTGCAGTGAAGGTTATAGAAGGAAGGGCATATAGACTGCAACACCCATGGGTTGGAACTGTGAACCGTTCTCAAGCTGATATCAACAAGAACATTGATATGATGGCTGCTCGTAGGAAGGAGCAGGAATACTTTGAAAATAGTCCTGATTATGGACACTCGGCACATAGAATGGGGTCAGAGTATCTCGCCAAACTTTTGTCTAAGCATTTGGAGACTGTCATCAGGCAGCGGATACCCAGTATCATTGCTTTGATAAATAAGACCATTAGTGAACTTAATGCAGAGCTGGATCGCATTGGCAGGCCAATTGGCATAGATTCAGGGGCCCAATTGTACACTATTTTAGAACTATGTCGTGCATTTGACCGTGTATTCAAGGAACACCTGGATGGAGGGAGACCTGGTGGAGATCGTATATACAAAGTTTTTGACCACCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTGATCGGCATCTTTCTGTAAAGAATGTCCAAAAAGTTGTTACAGAGGCTGATGGCTATCAGCCCCATTTGATTGCTCCAGAACAAGGAAACCGCAGACTTATTGATGGAGCTATCGTCTATTTTAAAGGACCAGCTGAAGCCTCTGTGGATGCTGTGCACTTTGTTTTGAAAGAACTTGTACAGAAGTCAATAGCTGAGACAGAGGAATTGAGACGATTCCCTACACTTCAGTCTGACATTGCAGCAGCTTCCACAGAAGCATTGGAAAGATTCCGTGATGAAAGCAGGAAGACAGTTACACGGCTGGTGGAAATGGAGTCCAGCTACCTAACGGTGGAATTTTTCAGGAAGCTTAATATGGAAGGGGACAGAAATCAAAACCAAACAGGACCAAATGCAGACAAAAATAGAAAAGAACCGCCACCAAATATGGACATGGTTGGGGATAATTATCTCAGGAGGATCGGTATGCAACATCAAACGTCAACTCTTAGATCAATATGGTTTGTGAGACTGAGGAATTTGATTCCGAAGGCTGTTGTCCACTGTCAAGTTCGAGAGCCCAAAAGATCTCTGCTCAACTACTTTTACACTCAAATTGGGAGGCAAGAGAAGGAGAGGCTAGGTGCAATGTTGGATGAGGATCCAGCACTCATGGAAAAGCGAACGCTTATTGCTAAACGGCTTGAACTGTACAAGTCAGCCAGAGATGAGATTGACTCTGTCGCGTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

408

Amino Acids

46.97

Weight (kDa)

9.36

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	8 - 275	8.1e-60	Dynamin central region
GED	PF02212	334 - 405	1.2e-15	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	71
AccII	CGCG	1 cut(s)	1217
AciI	CCGC	3 cut(s)	250, 580, 908
AclWI	GGATC	4 cut(s)	318, 959, 1127, 1140
AcsI	RAATTY	2 cut(s)	827, 1009
AcuI	CTGAAG	2 cut(s)	645, 701
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	356, 669, 1184
AfiI	CCNNNNNNNGG	4 cut(s)	71, 170, 572, 823
AgsI	TTSAA	4 cut(s)	155, 397, 658, 1178
AjnI	CCWGG	2 cut(s)	405, 421
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	5 cut(s)	227, 412, 680, 694, 994
Alw44I	GTGCAC	1 cut(s)	644
AlwI	GGATC	4 cut(s)	318, 959, 1127, 1140
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	2 cut(s)	323, 345
ApaI	GGGCCC	1 cut(s)	349
ApaLI	GTGCAC	1 cut(s)	644
ApeKI	GCWGC	5 cut(s)	125, 247, 467, 731, 734
ApoI	RAATTY	2 cut(s)	827, 1009
AspS9I	GGNCC	4 cut(s)	345, 346, 617, 878
AvaII	GGWCC	2 cut(s)	617, 878
BaeGI	GKGCMC	2 cut(s)	349, 648
BamHI	GGATCC	1 cut(s)	1132
BanII	GRGCYC	2 cut(s)	349, 1053
BbsI	GAAGAC	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	5 cut(s)	112, 259, 454, 743, 746
BccI	CCATC	4 cut(s)	115, 404, 533, 587
BceAI	ACGGC	2 cut(s)	806, 1187
BciT130I	CCWGG	2 cut(s)	407, 423
BciVI	GTATCC	1 cut(s)	246
BcoDI	GTCTC	5 cut(s)	227, 412, 680, 694, 994
BfaI	CTAG	1 cut(s)	1112
BfmI	CTRYAG	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	246
BglII	AGATCT	1 cut(s)	1058
BisI	GCNGC	5 cut(s)	126, 248, 468, 732, 735
BlsI	GCNGC	5 cut(s)	127, 249, 469, 733, 736
Bme1390I	CCNGG	2 cut(s)	407, 423
Bme18I	GGWCC	2 cut(s)	617, 878
BmgT120I	GGNCC	4 cut(s)	345, 346, 617, 878
BmiI	GGNNCC	3 cut(s)	346, 347, 1134
BmrFI	CCNGG	2 cut(s)	407, 423
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	505, 628
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	785
BplI	GAGNNNNNCTC	2 cut(s)	1193, 1225
BpmI	CTGGAG	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	75
BsaBI	GATNNNNATC	4 cut(s)	495, 543, 939, 1131
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	65
BsaXI	ACNNNNNCTCC	6 cut(s)	409, 439, 588, 618, 940, 970
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 170, 572, 823
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	3 cut(s)	264, 726, 1125
Bse8I	GATNNNNATC	4 cut(s)	495, 543, 939, 1131
BseBI	CCWGG	2 cut(s)	407, 423
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	3 cut(s)	415, 643, 1132
BseJI	GATNNNNATC	4 cut(s)	495, 543, 939, 1131
BseLI	CCNNNNNNNGG	4 cut(s)	71, 170, 572, 823
BseMI	GCAATG	3 cut(s)	264, 726, 1125
BseMII	CTCAG	3 cut(s)	675, 958, 995
BseNI	ACTGG	1 cut(s)	258
BseSI	GKGCMC	2 cut(s)	349, 648
BseXI	GCAGC	5 cut(s)	112, 259, 454, 743, 746
Bsh1236I	CGCG	1 cut(s)	1217
BshFI	GGCC	2 cut(s)	325, 347
BsiHKAI	GWGCWC	1 cut(s)	648
BslFI	GGGAC	1 cut(s)	869
BslI	CCNNNNNNNGG	4 cut(s)	71, 170, 572, 823
BsmAI	GTCTC	5 cut(s)	227, 412, 680, 694, 994
BsmBI	CGTCTC	1 cut(s)	694
BsmFI	GGGAC	1 cut(s)	869
BsnI	GGCC	2 cut(s)	325, 347
Bso31I	GGTCTC	1 cut(s)	412
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	3 cut(s)	349, 648, 1053
Bsp1407I	TGTACA	3 cut(s)	354, 667, 1182
Bsp143I	GATC	7 cut(s)	310, 430, 490, 951, 983, 1058, 1132
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	3 cut(s)	250, 580, 908
BspANI	GGCC	2 cut(s)	325, 347
BspCNI	CTCAG	3 cut(s)	676, 957, 996
BspFNI	CGCG	1 cut(s)	1217
BspLI	GGNNCC	3 cut(s)	346, 347, 1134
BspPI	GGATC	4 cut(s)	318, 959, 1127, 1140
BspTNI	GGTCTC	1 cut(s)	412
BsrDI	GCAATG	3 cut(s)	264, 726, 1125
BsrGI	TGTACA	3 cut(s)	354, 667, 1182
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	7 cut(s)	310, 430, 490, 951, 983, 1058, 1132
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	2 cut(s)	407, 423
Bst4CI	ACNGT	8 cut(s)	79, 86, 238, 389, 784, 823, 1037, 1182
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	3 cut(s)	354, 667, 1182
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	5 cut(s)	222, 684, 944, 980, 1004
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	415, 643, 1132
BstFNI	CGCG	1 cut(s)	1217
BstKTI	GATC	7 cut(s)	313, 433, 493, 954, 986, 1061, 1135
BstMAI	GTCTC	5 cut(s)	227, 412, 680, 694, 994
BstMBI	GATC	7 cut(s)	310, 430, 490, 951, 983, 1058, 1132
BstNI	CCWGG	2 cut(s)	407, 423
BstSCI	CCNGG	2 cut(s)	405, 421
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	2 cut(s)	349, 648
BstUI	CGCG	1 cut(s)	1217
BstV1I	GCAGC	5 cut(s)	112, 259, 454, 743, 746
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	2 cut(s)	1058, 1132
BstYI	RGATCY	2 cut(s)	1058, 1132
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	325, 347
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	415, 643, 1132
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 1033
Cac8I	GCNNGC	1 cut(s)	323
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr13I	GGNCC	4 cut(s)	345, 346, 617, 878
CsiI	ACCWGGT	1 cut(s)	421
Csp6I	GTAC	3 cut(s)	355, 668, 1183
CviAII	CATG	3 cut(s)	66, 925, 1144
CviQI	GTAC	3 cut(s)	355, 668, 1183
DdeI	CTNAG	5 cut(s)	222, 684, 944, 980, 1004
DpnI	GATC	7 cut(s)	312, 432, 492, 953, 985, 1060, 1134
DpnII	GATC	7 cut(s)	310, 430, 490, 951, 983, 1058, 1132
DraI	TTTAAA	2 cut(s)	474, 613
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	2 cut(s)	349, 1053
Eco31I	GGTCTC	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	617, 878
Eco57I	CTGAAG	2 cut(s)	645, 701
EcoO109I	RGGNCCY	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	405, 421
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	2 cut(s)	349, 1053
ErhI	CCWWGG	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	694
FaeI	CATG	3 cut(s)	69, 928, 1147
FaqI	GGGAC	1 cut(s)	869
FatI	CATG	3 cut(s)	65, 924, 1143
Fnu4HI	GCNGC	5 cut(s)	126, 248, 468, 732, 735
FokI	GGATG	3 cut(s)	422, 650, 1139
FriOI	GRGCYC	2 cut(s)	349, 1053
Fsp4HI	GCNGC	5 cut(s)	126, 248, 468, 732, 735
FspBI	CTAG	1 cut(s)	1112
GluI	GCNGC	5 cut(s)	126, 248, 468, 732, 735
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	325, 347
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	69, 928, 1147
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	6 cut(s)	338, 705, 759, 806, 1015, 1208
Hpy166II	GTNNAC	6 cut(s)	82, 293, 357, 646, 975, 1033
Hpy188I	TCNGA	3 cut(s)	199, 724, 1020
Hpy188III	TCNNGA	5 cut(s)	164, 566, 835, 946, 1046
Hpy8I	GTNNAC	6 cut(s)	82, 293, 357, 646, 975, 1033
HpyAV	CCTTC	7 cut(s)	22, 32, 36, 130, 845, 1015, 1096
HpyCH4III	ACNGT	8 cut(s)	79, 86, 238, 389, 784, 823, 1037, 1182
HpyCH4IV	ACGT	1 cut(s)	971
HpyCH4V	TGCA	9 cut(s)	23, 58, 302, 380, 646, 731, 887, 961, 1118
HpyF3I	CTNAG	5 cut(s)	222, 684, 944, 980, 1004
HpySE526I	ACGT	1 cut(s)	971
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	69, 928, 1147
Kzo9I	GATC	7 cut(s)	310, 430, 490, 951, 983, 1058, 1132
LmnI	GCTCC	4 cut(s)	139, 486, 568, 596
Lsp1109I	GCAGC	5 cut(s)	112, 259, 454, 743, 746
LweI	GCATC	2 cut(s)	505, 628
MabI	ACCWGGT	1 cut(s)	421
MaeI	CTAG	1 cut(s)	1112
MaeII	ACGT	1 cut(s)	971
MaeIII	GTNAC	2 cut(s)	526, 784
MalI	GATC	7 cut(s)	312, 432, 492, 953, 985, 1060, 1134
MboI	GATC	7 cut(s)	310, 430, 490, 951, 983, 1058, 1132
MboII	GAAGA	1 cut(s)	790
MfeI	CAATTG	2 cut(s)	327, 350
MflI	RGATCY	2 cut(s)	1058, 1132
MhlI	GDGCHC	3 cut(s)	349, 648, 1053
MluCI	AATT	8 cut(s)	327, 350, 458, 695, 827, 937, 1009, 1086
MlyI	GAGTC	2 cut(s)	815, 1202
MmeI	TCCRAC	2 cut(s)	52, 1104
MnlI	CCTC	9 cut(s)	407, 526, 640, 685, 942, 999, 1086, 1101, 1123
MseI	TTAA	4 cut(s)	297, 473, 612, 843
MslI	CAYNNNNRTG	2 cut(s)	116, 408
MspA1I	CMGCKG	3 cut(s)	250, 467, 623
MspR9I	CCNGG	2 cut(s)	407, 423
MunI	CAATTG	2 cut(s)	327, 350
MvaI	CCWGG	2 cut(s)	407, 423
MvnI	CGCG	1 cut(s)	1217
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	7 cut(s)	310, 430, 490, 951, 983, 1058, 1132
NlaIII	CATG	3 cut(s)	69, 928, 1147
NlaIV	GGNNCC	3 cut(s)	346, 347, 1134
NmeAIII	GCCGAG	1 cut(s)	158
PfeI	GAWTC	4 cut(s)	338, 705, 759, 1015
PflFI	GACNNNGTC	1 cut(s)	1211
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	127, 249, 469, 733, 736
PleI	GAGTC	2 cut(s)	814, 1202
PpsI	GAGTC	2 cut(s)	814, 1202
Psp6I	CCWGG	2 cut(s)	405, 421
PspGI	CCWGG	2 cut(s)	405, 421
PspN4I	GGNNCC	3 cut(s)	346, 347, 1134
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	4 cut(s)	345, 346, 617, 878
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	2 cut(s)	1058, 1132
PsyI	GACNNNGTC	1 cut(s)	1211
PvuII	CAGCTG	2 cut(s)	467, 623
RsaI	GTAC	3 cut(s)	356, 669, 1184
RsaNI	GTAC	3 cut(s)	355, 668, 1183
RseI	CAYNNNNRTG	2 cut(s)	116, 408
SaqAI	TTAA	4 cut(s)	297, 473, 612, 843
SatI	GCNGC	5 cut(s)	126, 248, 468, 732, 735
Sau3AI	GATC	7 cut(s)	310, 430, 490, 951, 983, 1058, 1132
Sau96I	GGNCC	4 cut(s)	345, 346, 617, 878
SchI	GAGTC	2 cut(s)	815, 1202
ScrFI	CCNGG	2 cut(s)	407, 423
SduI	GDGCHC	3 cut(s)	349, 648, 1053
SexAI	ACCWGGT	1 cut(s)	421
SfaNI	GCATC	2 cut(s)	505, 628
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	617, 878
SmiMI	CAYNNNNRTG	2 cut(s)	116, 408
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	8 cut(s)	327, 350, 458, 695, 827, 937, 1009, 1086
SsiI	CCGC	3 cut(s)	250, 580, 908
SspMI	CTAG	1 cut(s)	1112
StyD4I	CCNGG	2 cut(s)	405, 421
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	8 cut(s)	79, 86, 238, 389, 784, 823, 1037, 1182
TaiI	ACGT	1 cut(s)	974
TaqI	TCGA	1 cut(s)	1045
TasI	AATT	8 cut(s)	327, 350, 458, 695, 827, 937, 1009, 1086
TatI	WGTACW	3 cut(s)	354, 667, 1182
TfiI	GAWTC	4 cut(s)	338, 705, 759, 1015
Tru1I	TTAA	4 cut(s)	297, 473, 612, 843
Tru9I	TTAA	4 cut(s)	297, 473, 612, 843
TscAI	CASTG	2 cut(s)	30, 1040
TseI	GCWGC	5 cut(s)	125, 247, 467, 731, 734
TspDTI	ATGAA	1 cut(s)	783
TspGWI	ACGGA	1 cut(s)	752
TspRI	CASTG	2 cut(s)	30, 1040
Tth111I	GACNNNGTC	1 cut(s)	1211
Van91I	CCANNNNNTGG	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	617, 878
XapI	RAATTY	2 cut(s)	827, 1009
XcmI	CCANNNNNNNNNTGG	1 cut(s)	748
XspI	CTAG	1 cut(s)	1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.