Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035241.1

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1466

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 559 bp

gcgacctggtggagatcgtatatacaaagtttttgaccaccaattaccagctgctttaaaaaagctcccatttgatcggcatctttctgtaaagaatgtccaaaaagttgttacagaggctgatggctatcagccccatttgattgctccagaacaaggataccgcagacttattgatggagctatcgtctattttaaaggaccagctgaagcctctgtggatgctgtgcactttgttttgaaagaacttgtacagaagtcaatagctgagacagaggaattgagacgattccctacacttcagtctgacattgcagcagcttccacagaagcattggaaagattccgtgatgaaagcaggaagacagttacacggctggtggaaatggagtctagctacctaacggtggaatttttcaggaagcttaatatggaaggggacagaaatcaaaaccaaacaggaccaaatgcagacaaaaatagaaaagaaccgccaccaaatatggacatggttggggataattatctcaggaggatcgcatcaaacgtcaactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

185

Amino Acids

21.07

Weight (kDa)

8.11

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	164, 492
AclWI	GGATC	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	2 cut(s)	229, 285
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	156, 407
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	8 cut(s)	51, 65, 183, 207, 267, 321, 397, 425
AluI	AGCT	8 cut(s)	51, 65, 183, 207, 267, 321, 397, 425
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	2 cut(s)	264, 278
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	543
AlwNI	CAGNNNCTG	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	51, 315, 318
ApoI	RAATTY	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	201, 462
AvaII	GGWCC	2 cut(s)	201, 462
BaeGI	GKGCMC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	3 cut(s)	38, 327, 330
BccI	CCATC	2 cut(s)	117, 171
BceAI	ACGGC	1 cut(s)	390
BciT130I	CCWGG	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	264, 278
BfaI	CTAG	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	153
BisI	GCNGC	3 cut(s)	52, 316, 319
BlsI	GCNGC	3 cut(s)	53, 317, 320
Bme1390I	CCNGG	1 cut(s)	7
Bme18I	GGWCC	2 cut(s)	201, 462
BmgT120I	GGNCC	2 cut(s)	201, 462
BmrFI	CCNGG	1 cut(s)	7
BmsI	GCATC	3 cut(s)	89, 212, 549
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	133
BsaBI	GATNNNNATC	3 cut(s)	79, 127, 523
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 407
Bse3DI	GCAATG	1 cut(s)	310
Bse8I	GATNNNNATC	3 cut(s)	79, 127, 523
BseBI	CCWGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	227
BseJI	GATNNNNATC	3 cut(s)	79, 127, 523
BseLI	CCNNNNNNNGG	2 cut(s)	156, 407
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	259, 542
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	3 cut(s)	38, 327, 330
BsiHKAI	GWGCWC	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	156, 407
BsmAI	GTCTC	2 cut(s)	264, 278
BsmBI	CGTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	14, 74, 535
BspACI	CCGC	2 cut(s)	164, 492
BspCNI	CTCAG	2 cut(s)	260, 541
BspPI	GGATC	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	251
BssMI	GATC	3 cut(s)	14, 74, 535
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	2 cut(s)	368, 407
BstAUI	TGTACA	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	268, 528, 556
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	3 cut(s)	17, 77, 538
BstMAI	GTCTC	2 cut(s)	264, 278
BstMBI	GATC	3 cut(s)	14, 74, 535
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	3 cut(s)	38, 327, 330
BstV2I	GAAGAC	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	201, 462
CsiI	ACCWGGT	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	509
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	3 cut(s)	268, 528, 556
DpnI	GATC	3 cut(s)	16, 76, 537
DpnII	GATC	3 cut(s)	14, 74, 535
DraI	TTTAAA	2 cut(s)	58, 197
Eco47I	GGWCC	2 cut(s)	201, 462
Eco57I	CTGAAG	2 cut(s)	229, 285
EcoRII	CCWGG	1 cut(s)	5
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	1 cut(s)	512
FaiI	YATR	5 cut(s)	21, 23, 432, 504, 510
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	52, 316, 319
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	52, 316, 319
FspBI	CTAG	1 cut(s)	394
GluI	GCNGC	3 cut(s)	52, 316, 319
GsuI	CTGGAG	1 cut(s)	133
Hin1II	CATG	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	3 cut(s)	289, 343, 390
Hpy166II	GTNNAC	2 cut(s)	230, 551
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	3 cut(s)	150, 419, 530
Hpy8I	GTNNAC	2 cut(s)	230, 551
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	2 cut(s)	368, 407
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	3 cut(s)	230, 315, 471
HpyF3I	CTNAG	3 cut(s)	268, 528, 556
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	14, 74, 535
LmnI	GCTCC	3 cut(s)	70, 152, 180
LpnPI	CCDG	9 cut(s)	19, 61, 163, 217, 344, 363, 404, 445, 515
Lsp1109I	GCAGC	3 cut(s)	38, 327, 330
LweI	GCATC	3 cut(s)	89, 212, 549
MabI	ACCWGGT	1 cut(s)	5
MaeI	CTAG	1 cut(s)	394
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	2 cut(s)	110, 368
MalI	GATC	3 cut(s)	16, 76, 537
MboI	GATC	3 cut(s)	14, 74, 535
MboII	GAAGA	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	4 cut(s)	42, 279, 411, 521
MlyI	GAGTC	1 cut(s)	399
MnlI	CCTC	4 cut(s)	110, 224, 269, 526
MseI	TTAA	3 cut(s)	57, 196, 427
MspA1I	CMGCKG	2 cut(s)	51, 207
MspR9I	CCNGG	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	7
NdeII	GATC	3 cut(s)	14, 74, 535
NlaIII	CATG	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	289, 343
PkrI	GCNGC	3 cut(s)	53, 317, 320
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspPI	GGNCC	2 cut(s)	201, 462
PstNI	CAGNNNCTG	1 cut(s)	120
PvuII	CAGCTG	2 cut(s)	51, 207
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	57, 196, 427
SatI	GCNGC	3 cut(s)	52, 316, 319
Sau3AI	GATC	3 cut(s)	14, 74, 535
Sau96I	GGNCC	2 cut(s)	201, 462
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	232
SexAI	ACCWGGT	1 cut(s)	5
SfaNI	GCATC	3 cut(s)	89, 212, 549
SinI	GGWCC	2 cut(s)	201, 462
Sse9I	AATT	4 cut(s)	42, 279, 411, 521
SsiI	CCGC	2 cut(s)	164, 492
SspMI	CTAG	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	368, 407
TaiI	ACGT	1 cut(s)	550
TasI	AATT	4 cut(s)	42, 279, 411, 521
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	2 cut(s)	289, 343
Tru1I	TTAA	3 cut(s)	57, 196, 427
Tru9I	TTAA	3 cut(s)	57, 196, 427
TseI	GCWGC	3 cut(s)	51, 315, 318
TspDTI	ATGAA	1 cut(s)	367
TspGWI	ACGGA	1 cut(s)	336
VneI	GTGCAC	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	201, 462
XapI	RAATTY	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.