Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Reverse (-)

23967951 .. 23970292

Gene Structure 2342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGGTCAGAGTATCTCGCCAAACTTTTGTCTAAGCATTTGGAGACTGTCATCAGGCAGCGGATACCCAGTATCATTGCTTTGATAAATAAGACCATTAGTGAACTTAATGCAGAGCTGGATCGCATTGGCAGGCCAATTGGCATAGATTCAGGGGCCCAATTGTACACTATTTTAGAACTATGTCGTGCATTTGACCGTGTATTCAAGGAACACCTGGATGGAGGGCGACCTGGTGGAGATCGTATATACAAAGTTTTTGACCACCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTGATCGGCATCTTTCTGTAAAGAATGTCCAAAAAGTTGTTACAGAGGCTGATGGATATCAGCCCCATTTGATTGCTCCAGAACAAGGATACCGCAGACTTATTGATGGAGCTATCGTCTATTTTAAAGGACCAGCTGAAGCCTCTGTGGATGCTGTGCACTTTGTTTTGAAAGAACTTGTACAGAAGTCAATAGCTGAGACAGAGGAATTGAGACGATTCCCTACACTTCAGTCTGACATTGCAGCAGCTTCCACAGAAGCATTGGAAAGATTCCGTGATGAAAGCAGGAAGACAGTTACACGGCTGGTGGAAATGGAGTCTAGCTACCTGACGGTGGAATTTTTCAGGAAGCTTAATATGGAAGGGGACAGAAATCAAAACCAAACAGGACCAAATGCAGACAAAAATAGAAAAGAACCGCCACCAAATATGGACATGGTTGGGGATAATTATCTCAGGAGGATCGCATCAAACGTCAACTCTTATATCAATATGGTTTGTGAGACTGAGGAATTTGATTCCGAAGGCTGTTGTCCACTGTCAAGTTCGAGAGGCCAAAAGATCTCTGCTCAACTACTTTTACACTCAAATTGGGAGGCAAGAGAAGGAGAGGCTAGGTGCAATGTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

310

Amino Acids

35.01

Weight (kDa)

6.22

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	1 - 212	7.7e-39	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	61, 391, 719
AclWI	GGATC	2 cut(s)	129, 770
AcsI	RAATTY	2 cut(s)	638, 812
AcuI	CTGAAG	2 cut(s)	456, 512
AfaI	GTAC	2 cut(s)	167, 480
AfiI	CCNNNNNNNGG	2 cut(s)	383, 634
AgsI	TTSAA	2 cut(s)	208, 469
AjnI	CCWGG	2 cut(s)	216, 232
AluBI	AGCT	9 cut(s)	118, 278, 292, 410, 434, 494, 548, 624, 652
AluI	AGCT	9 cut(s)	118, 278, 292, 410, 434, 494, 548, 624, 652
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	4 cut(s)	38, 491, 505, 797
Alw44I	GTGCAC	1 cut(s)	455
AlwI	GGATC	2 cut(s)	129, 770
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	3 cut(s)	134, 156, 853
ApaI	GGGCCC	1 cut(s)	160
ApaLI	GTGCAC	1 cut(s)	455
ApeKI	GCWGC	4 cut(s)	58, 278, 542, 545
ApoI	RAATTY	2 cut(s)	638, 812
AspS9I	GGNCC	4 cut(s)	156, 157, 428, 689
AvaII	GGWCC	2 cut(s)	428, 689
BaeGI	GKGCMC	2 cut(s)	160, 459
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	70, 265, 554, 557
BccI	CCATC	3 cut(s)	215, 344, 398
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	218, 234
BciVI	GTATCC	2 cut(s)	57, 380
BcoDI	GTCTC	4 cut(s)	38, 491, 505, 797
BfaI	CTAG	2 cut(s)	621, 915
BfuI	GTATCC	2 cut(s)	57, 380
BglII	AGATCT	1 cut(s)	861
BisI	GCNGC	4 cut(s)	59, 279, 543, 546
BlsI	GCNGC	4 cut(s)	60, 280, 544, 547
Bme1390I	CCNGG	2 cut(s)	218, 234
Bme18I	GGWCC	2 cut(s)	428, 689
BmgT120I	GGNCC	4 cut(s)	156, 157, 428, 689
BmiI	GGNNCC	2 cut(s)	157, 158
BmrFI	CCNGG	2 cut(s)	218, 234
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	3 cut(s)	316, 439, 776
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	360
BsaBI	GATNNNNATC	3 cut(s)	306, 354, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 634
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	3 cut(s)	75, 537, 928
Bse8I	GATNNNNATC	3 cut(s)	306, 354, 750
BseBI	CCWGG	2 cut(s)	218, 234
BseGI	GGATG	2 cut(s)	226, 454
BseJI	GATNNNNATC	3 cut(s)	306, 354, 750
BseLI	CCNNNNNNNGG	2 cut(s)	383, 634
BseMI	GCAATG	3 cut(s)	75, 537, 928
BseMII	CTCAG	3 cut(s)	486, 769, 798
BseNI	ACTGG	1 cut(s)	69
BseSI	GKGCMC	2 cut(s)	160, 459
BseXI	GCAGC	4 cut(s)	70, 265, 554, 557
BshFI	GGCC	3 cut(s)	136, 158, 855
BsiHKAI	GWGCWC	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	2 cut(s)	383, 634
BsmAI	GTCTC	4 cut(s)	38, 491, 505, 797
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	3 cut(s)	136, 158, 855
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	160, 459
Bsp1407I	TGTACA	2 cut(s)	165, 478
Bsp143I	GATC	5 cut(s)	121, 241, 301, 762, 861
BspACI	CCGC	3 cut(s)	61, 391, 719
BspANI	GGCC	3 cut(s)	136, 158, 855
BspCNI	CTCAG	3 cut(s)	487, 768, 799
BspLI	GGNNCC	2 cut(s)	157, 158
BspPI	GGATC	2 cut(s)	129, 770
BsrDI	GCAATG	3 cut(s)	75, 537, 928
BsrGI	TGTACA	2 cut(s)	165, 478
BsrI	ACTGG	1 cut(s)	69
BssMI	GATC	5 cut(s)	121, 241, 301, 762, 861
Bst2UI	CCWGG	2 cut(s)	218, 234
Bst4CI	ACNGT	5 cut(s)	49, 200, 595, 634, 840
BstAUI	TGTACA	2 cut(s)	165, 478
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	4 cut(s)	33, 495, 755, 807
BstF5I	GGATG	2 cut(s)	226, 454
BstKTI	GATC	5 cut(s)	124, 244, 304, 765, 864
BstMAI	GTCTC	4 cut(s)	38, 491, 505, 797
BstMBI	GATC	5 cut(s)	121, 241, 301, 762, 861
BstNI	CCWGG	2 cut(s)	218, 234
BstSCI	CCNGG	2 cut(s)	216, 232
BstSLI	GKGCMC	2 cut(s)	160, 459
BstV1I	GCAGC	4 cut(s)	70, 265, 554, 557
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
BsuI	GTATCC	2 cut(s)	57, 380
BsuRI	GGCC	3 cut(s)	136, 158, 855
BtsCI	GGATG	2 cut(s)	226, 454
BtsIMutI	CAGTG	1 cut(s)	836
Cac8I	GCNNGC	1 cut(s)	134
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	4 cut(s)	156, 157, 428, 689
CsiI	ACCWGGT	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	166, 479
CviAII	CATG	1 cut(s)	736
CviQI	GTAC	2 cut(s)	166, 479
DdeI	CTNAG	4 cut(s)	33, 495, 755, 807
DpnI	GATC	5 cut(s)	123, 243, 303, 764, 863
DpnII	GATC	5 cut(s)	121, 241, 301, 762, 861
DraI	TTTAAA	2 cut(s)	285, 424
Eco24I	GRGCYC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	356
Eco47I	GGWCC	2 cut(s)	428, 689
Eco57I	CTGAAG	2 cut(s)	456, 512
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	2 cut(s)	216, 232
EcoRV	GATATC	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	505
FaeI	CATG	1 cut(s)	739
FaiI	YATR	9 cut(s)	146, 184, 248, 250, 659, 731, 737, 786, 794
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	1 cut(s)	735
Fnu4HI	GCNGC	4 cut(s)	59, 279, 543, 546
FokI	GGATG	2 cut(s)	233, 461
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	4 cut(s)	59, 279, 543, 546
FspBI	CTAG	2 cut(s)	621, 915
GluI	GCNGC	4 cut(s)	59, 279, 543, 546
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	136, 158, 855
Hin1II	CATG	1 cut(s)	739
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	5 cut(s)	149, 516, 570, 617, 818
Hpy166II	GTNNAC	5 cut(s)	104, 168, 457, 778, 836
Hpy188I	TCNGA	3 cut(s)	10, 535, 823
Hpy188III	TCNNGA	4 cut(s)	377, 646, 757, 849
Hpy8I	GTNNAC	5 cut(s)	104, 168, 457, 778, 836
HpyAV	CCTTC	3 cut(s)	656, 818, 899
HpyCH4III	ACNGT	5 cut(s)	49, 200, 595, 634, 840
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	6 cut(s)	113, 191, 457, 542, 698, 921
HpyF3I	CTNAG	4 cut(s)	33, 495, 755, 807
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	121, 241, 301, 762, 861
LmnI	GCTCC	3 cut(s)	297, 379, 407
Lsp1109I	GCAGC	4 cut(s)	70, 265, 554, 557
LweI	GCATC	3 cut(s)	316, 439, 776
MabI	ACCWGGT	1 cut(s)	232
MaeI	CTAG	2 cut(s)	621, 915
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	2 cut(s)	337, 595
MalI	GATC	5 cut(s)	123, 243, 303, 764, 863
MboI	GATC	5 cut(s)	121, 241, 301, 762, 861
MboII	GAAGA	1 cut(s)	601
MfeI	CAATTG	2 cut(s)	138, 161
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	2 cut(s)	160, 459
MluCI	AATT	8 cut(s)	138, 161, 269, 506, 638, 748, 812, 889
MlyI	GAGTC	1 cut(s)	626
MmeI	TCCRAC	1 cut(s)	907
MnlI	CCTC	9 cut(s)	218, 337, 451, 496, 753, 802, 845, 889, 904
MseI	TTAA	4 cut(s)	108, 284, 423, 654
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	3 cut(s)	61, 278, 434
MspR9I	CCNGG	2 cut(s)	218, 234
MunI	CAATTG	2 cut(s)	138, 161
MvaI	CCWGG	2 cut(s)	218, 234
NdeII	GATC	5 cut(s)	121, 241, 301, 762, 861
NlaIII	CATG	1 cut(s)	739
NlaIV	GGNNCC	2 cut(s)	157, 158
PcsI	WCGNNNNNNNCGW	1 cut(s)	771
PfeI	GAWTC	4 cut(s)	149, 516, 570, 818
PkrI	GCNGC	4 cut(s)	60, 280, 544, 547
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
Psp6I	CCWGG	2 cut(s)	216, 232
PspGI	CCWGG	2 cut(s)	216, 232
PspN4I	GGNNCC	2 cut(s)	157, 158
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	4 cut(s)	156, 157, 428, 689
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	861
PvuII	CAGCTG	2 cut(s)	278, 434
RsaI	GTAC	2 cut(s)	167, 480
RsaNI	GTAC	2 cut(s)	166, 479
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	4 cut(s)	108, 284, 423, 654
SatI	GCNGC	4 cut(s)	59, 279, 543, 546
Sau3AI	GATC	5 cut(s)	121, 241, 301, 762, 861
Sau96I	GGNCC	4 cut(s)	156, 157, 428, 689
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	2 cut(s)	218, 234
SduI	GDGCHC	2 cut(s)	160, 459
SexAI	ACCWGGT	1 cut(s)	232
SfaNI	GCATC	3 cut(s)	316, 439, 776
SinI	GGWCC	2 cut(s)	428, 689
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	8 cut(s)	138, 161, 269, 506, 638, 748, 812, 889
SsiI	CCGC	3 cut(s)	61, 391, 719
SspMI	CTAG	2 cut(s)	621, 915
StyD4I	CCNGG	2 cut(s)	216, 232
TaaI	ACNGT	5 cut(s)	49, 200, 595, 634, 840
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	1 cut(s)	848
TasI	AATT	8 cut(s)	138, 161, 269, 506, 638, 748, 812, 889
TatI	WGTACW	2 cut(s)	165, 478
TfiI	GAWTC	4 cut(s)	149, 516, 570, 818
Tru1I	TTAA	4 cut(s)	108, 284, 423, 654
Tru9I	TTAA	4 cut(s)	108, 284, 423, 654
TscAI	CASTG	1 cut(s)	843
TseI	GCWGC	4 cut(s)	58, 278, 542, 545
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	843
VneI	GTGCAC	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	428, 689
XapI	RAATTY	2 cut(s)	638, 812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XspI	CTAG	2 cut(s)	621, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.