Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Forward (+)

41409978 .. 41416507

Gene Structure 6530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATCCTCACCCCCTCAGCTGCAGTTCGGAAGGAAATTCAGGTTGAAACAGACAGAATGCCAGAGAAATCAAACCGTATTTCCAATGTTCCTATTCATCTCAGCATATACTCCCCAAATGTTGTCAATTTAACATTGATAGATTTGCCTGGCTTAACTAAGGTTGCTGTAGGGGCAGCCAGAGAGTATTGTTCAAGACATAGAAAACATGGTTCGTTCTTATATAGCAAAGGCCCAATTATATACTATCTTAGAGCTGTGCCGGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

90

Amino Acids

10.09

Weight (kDa)

9.66

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	7 - 64	1.2e-11	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	47, 195
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	2 cut(s)	20, 257
AluI	AGCT	2 cut(s)	20, 257
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	20, 176
ApoI	RAATTY	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	233
BbvCI	CCTCAGC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	7, 188
BciT130I	CCWGG	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	21, 168
BisI	GCNGC	2 cut(s)	21, 177
BlsI	GCNGC	2 cut(s)	22, 178
Bme1390I	CCNGG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	30, 115
BseXI	GCAGC	2 cut(s)	7, 188
BshFI	GGCC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	29, 114
BspMAI	CTGCAG	1 cut(s)	25
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	77
BstDEI	CTNAG	4 cut(s)	16, 101, 159, 251
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	2 cut(s)	21, 168
BstV1I	GCAGC	2 cut(s)	7, 188
BsuRI	GGCC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	233
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	5 cut(s)	20, 153, 179, 234, 257
CviKI_1	RGCY	5 cut(s)	20, 153, 179, 234, 257
DdeI	CTNAG	4 cut(s)	16, 101, 159, 251
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	212
FaiI	YATR	8 cut(s)	107, 109, 201, 210, 223, 225, 242, 244
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	21, 177
Fsp4HI	GCNGC	2 cut(s)	21, 177
GluI	GCNGC	2 cut(s)	21, 177
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	1 cut(s)	212
HpaII	CCGG	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	4 cut(s)	16, 101, 159, 251
Hsp92II	CATG	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	5 cut(s)	26, 75, 135, 162, 193
Lsp1109I	GCAGC	2 cut(s)	7, 188
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MluCI	AATT	3 cut(s)	36, 127, 237
MnlI	CCTC	2 cut(s)	17, 25
MseI	TTAA	2 cut(s)	131, 155
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	212
PctI	GAATGC	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	22, 178
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	131, 155
SatI	GCNGC	2 cut(s)	21, 177
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	4 cut(s)	22, 45, 165, 259
SfcI	CTRYAG	2 cut(s)	21, 168
SgeI	CNNG	7 cut(s)	53, 74, 161, 162, 192, 207, 221
Sse9I	AATT	3 cut(s)	36, 127, 237
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	77
TasI	AATT	3 cut(s)	36, 127, 237
Tru1I	TTAA	2 cut(s)	131, 155
Tru9I	TTAA	2 cut(s)	131, 155
TseI	GCWGC	2 cut(s)	20, 176
TspDTI	ATGAA	1 cut(s)	86
XapI	RAATTY	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.