Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Reverse (-)

5744113 .. 5744371

Gene Structure 259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36343

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGGGTCAGAATATCTTGCCAAACTTTTGTCCAAGGTCCTCCATTTGAAGGCTCTCATCTGGCAGCGCATACCAAGGATCATTGCTTTGATAAATAAGACCATTAGGCCGAGTTTGTTTCACAGGACTGCTATGTCCTGCCTTAACAAGAGTCCTGGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

54

Amino Acids

6.14

Weight (kDa)

11.1

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	154
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	33, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	33, 74
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	33, 74
BssMI	GATC	1 cut(s)	78
BssT1I	CCWWGG	2 cut(s)	33, 74
Bst2UI	CCWGG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	37
CviJI	RGCY	2 cut(s)	53, 109
CviKI_1	RGCY	2 cut(s)	53, 109
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	33, 74
Eco47I	GGWCC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	33, 74
ErhI	CCWWGG	2 cut(s)	33, 74
FaiI	YATR	2 cut(s)	71, 134
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	69
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	151, 159
Hpy188I	TCNGA	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	43
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	78
LpnPI	CCDG	4 cut(s)	46, 109, 141, 151
Lsp1109I	GCAGC	1 cut(s)	76
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	153, 160
MnlI	CCTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
NdeII	GATC	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	135
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	2 cut(s)	153, 159
PpsI	GAGTC	2 cut(s)	153, 159
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	153, 160
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	1 cut(s)	39
SgeI	CNNG	8 cut(s)	29, 46, 73, 87, 123, 136, 150, 160
SinI	GGWCC	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	2 cut(s)	33, 74
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.