RchiOBHm_Chr3g0480161
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
25923098 .. 25924323
1226 bp
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UTR
Exon/CDS
Intron
PRQ44519

Sequence Viewer

Length: 474 bp
ATGGACAAAATCATTTACTTAAATCATCACATATACTTATTTAAAAGAATACTATTCTTTCTATCGACCTATTGTTTTTGGGTTTTCGCTCATTTCTGGGTGTACCTTGCAGCTGTAAACTTGACTCTCATAGATCTTCCTGGATTGACTAAGGTTGCTGTAGAGGGACAACCAGACAGCATTGTTGAGGATATTGAGAGTATGGTTCGTTCTTATGTTGAGAAGCCTAACTGCATTATATTGGCTATATCTCCTGCTAATCAAGATATTGCTACTTCAGATGCTATTAAACTTGCAAGAGAAGTTGATCCATCAGGTGAAAGAACATTTGGAGTGATGACAAAACTGGATCTAATGGACAAGGGAACCAACGCTCTCGATGTTATAGAAGGAAGGGCATATAGACTGCAACACCCATGGGTTGGAATTGTGAACCGTTCTCAAGCTGATATCAACAAGAACACATTGATATGA

Protein Analysis

157

Amino Acids

17.83

Weight (kDa)

5.76

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 38 - 116 4.5e-21 Dynamin family
Dynamin_M PF01031 124 - 155 6e-07 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 422
AclWI GGATC 2 cut(s) 302, 357
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 422
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AluBI AGCT 2 cut(s) 113, 446
AluI AGCT 2 cut(s) 113, 446
AlwI GGATC 2 cut(s) 302, 357
ApeKI GCWGC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 329
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 159
BglII AGATCT 1 cut(s) 133
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 180
Bsp143I GATC 3 cut(s) 133, 307, 349
Bsp19I CCATGG 1 cut(s) 416
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 2 cut(s) 302, 357
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 3 cut(s) 133, 307, 349
BssT1I CCWWGG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 416
BstKTI GATC 3 cut(s) 136, 310, 352
BstMBI GATC 3 cut(s) 133, 307, 349
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 133, 349
BstYI RGATCY 2 cut(s) 133, 349
BtgI CCRYGG 1 cut(s) 416
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 417
CviJI RGCY 4 cut(s) 113, 226, 245, 446
CviKI_1 RGCY 4 cut(s) 113, 226, 245, 446
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 150
DpnI GATC 3 cut(s) 135, 309, 351
DpnII GATC 3 cut(s) 133, 307, 349
DraI TTTAAA 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 416
Eco32I GATATC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 139
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 1 cut(s) 420
FaqI GGGAC 1 cut(s) 180
FatI CATG 1 cut(s) 416
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
Hin1II CATG 1 cut(s) 420
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 3 cut(s) 103, 118, 433
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 2 cut(s) 263, 377
Hpy8I GTNNAC 3 cut(s) 103, 118, 433
HpyAV CCTTC 2 cut(s) 383, 387
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4V TGCA 4 cut(s) 110, 234, 296, 409
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 420
Kzo9I GATC 3 cut(s) 133, 307, 349
LpnPI CCDG 7 cut(s) 82, 126, 153, 186, 267, 300, 332
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 271
MalI GATC 3 cut(s) 135, 309, 351
MboI GATC 3 cut(s) 133, 307, 349
MboII GAAGA 1 cut(s) 128
MflI RGATCY 2 cut(s) 133, 349
MluCI AATT 1 cut(s) 426
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 2 cut(s) 157, 181
MseI TTAA 3 cut(s) 20, 42, 288
MslI CAYNNNNRTG 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
NcoI CCATGG 1 cut(s) 416
NdeII GATC 3 cut(s) 133, 307, 349
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 422
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 367
PsrI GAACNNNNNNTAC 2 cut(s) 193, 225
PsuI RGATCY 2 cut(s) 133, 349
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 469
SaqAI TTAA 3 cut(s) 20, 42, 288
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 133, 307, 349
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 141
SetI ASST 6 cut(s) 71, 108, 115, 156, 319, 448
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 469
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 437
TaqI TCGA 2 cut(s) 65, 378
TasI AATT 1 cut(s) 426
Tru1I TTAA 3 cut(s) 20, 42, 288
Tru9I TTAA 3 cut(s) 20, 42, 288
TseI GCWGC 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.