RLG00000012829

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003082
Physical Location & Seq
Reverse (-)
22803285 .. 22804157
873 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012829

Sequence Viewer

Length: 399 bp
ATGAAGCTGTGTCAACCAAAAGCAATCTCCAGTGTTCGTCGACCTCAACCACTGAGAACGACGAGTTTGAGCTACGACGGGCCGGGTTGGGCGAGTTCCAATCGGATTTATCCTCTAGCTCCGAAGCTTCGACGGCACAGAGAGAGAGAGAGAAAAACCGGAGGGCAAGGGGAGGCAGAAGCCTTCGTCGCCGATGAGGTCGTTATGGACCGCCGAGGAGGCCAATCTCGACCATCACTCACATCCTCACCTTCGACGACATCGTTCTGGAGAATCTCGCCTGCGTTGAAAAACCGGCATGGAAAAACTTTTTTGCCGGCGTGTGCTCTTATGCTTGCTGTGTATGACAAGCTAAATGTGACCCTTTGTTCTTGCAACAAATCTATTGCTGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

10.39

Isoelectric Point (pI)

65.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 40
AciI CCGC 1 cut(s) 211
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 5 cut(s) 7, 72, 119, 127, 352
AluI AGCT 5 cut(s) 7, 72, 119, 127, 352
Alw21I GWGCWC 1 cut(s) 328
AoxI GGCC 2 cut(s) 80, 220
ApeKI GCWGC 2 cut(s) 389, 392
AspS9I GGNCC 2 cut(s) 80, 208
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 376, 379
BccI CCATC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 149
BcnI CCSGG 1 cut(s) 84
BfaI CTAG 1 cut(s) 116
BglI GCCNNNNNGGC 1 cut(s) 219
BisI GCNGC 2 cut(s) 390, 393
BlsI GCNGC 2 cut(s) 391, 394
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 80, 208
BmrFI CCNGG 1 cut(s) 84
BpmI CTGGAG 2 cut(s) 13, 289
BpuMI CCSGG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 158
Bse118I RCCGGY 2 cut(s) 294, 316
Bse1I ACTGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 376, 379
BshFI GGCC 2 cut(s) 82, 222
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 4 cut(s) 83, 159, 295, 317
BsnI GGCC 2 cut(s) 82, 222
Bsp1286I GDGCHC 1 cut(s) 328
BspACI CCGC 1 cut(s) 211
BspANI GGCC 2 cut(s) 82, 222
BspCNI CTCAG 1 cut(s) 45
BsrFI RCCGGY 2 cut(s) 294, 316
BsrI ACTGG 1 cut(s) 30
BssAI RCCGGY 2 cut(s) 294, 316
BssECI CCNNGG 1 cut(s) 214
BstC8I GCNNGC 3 cut(s) 282, 318, 336
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 242
BstMWI GCNNNNNNNGC 3 cut(s) 133, 188, 219
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 376, 379
BsuRI GGCC 2 cut(s) 82, 222
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 37, 50
Cac8I GCNNGC 3 cut(s) 282, 318, 336
Cfr10I RCCGGY 2 cut(s) 294, 316
Cfr13I GGNCC 2 cut(s) 80, 208
CviAII CATG 1 cut(s) 299
CviJI RGCY 8 cut(s) 7, 72, 82, 119, 127, 182, 222, 352
CviKI_1 RGCY 8 cut(s) 7, 72, 82, 119, 127, 182, 222, 352
DdeI CTNAG 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 208
FaeI CATG 1 cut(s) 302
FaiI YATR 4 cut(s) 206, 300, 332, 345
FatI CATG 1 cut(s) 298
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 390, 393
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 2 cut(s) 390, 393
FspBI CTAG 1 cut(s) 116
GluI GCNGC 2 cut(s) 390, 393
GsuI CTGGAG 2 cut(s) 13, 289
HaeIII GGCC 2 cut(s) 82, 222
HapII CCGG 4 cut(s) 83, 159, 295, 317
Hin1II CATG 1 cut(s) 302
HincII GTYRAC 2 cut(s) 14, 41
HindII GTYRAC 2 cut(s) 14, 41
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 273
HpaII CCGG 4 cut(s) 83, 159, 295, 317
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 2 cut(s) 14, 41
Hpy188I TCNGA 2 cut(s) 105, 123
Hpy188III TCNNGA 2 cut(s) 228, 268
Hpy8I GTNNAC 2 cut(s) 14, 41
Hpy99I CGWCG 6 cut(s) 42, 64, 80, 135, 191, 259
HpyAV CCTTC 2 cut(s) 193, 261
HpyCH4V TGCA 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 188, 219
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 302
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 7 cut(s) 43, 96, 172, 253, 294, 308, 330
Lsp1109I GCAGC 2 cut(s) 376, 379
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 328
MnlI CCTC 8 cut(s) 54, 123, 155, 166, 190, 209, 212, 256
MroNI GCCGGC 1 cut(s) 316
MseI TTAA 1 cut(s) 397
MspI CCGG 4 cut(s) 83, 159, 295, 317
MspR9I CCNGG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 133, 188, 219
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 1 cut(s) 84
NgoMIV GCCGGC 1 cut(s) 316
NlaIII CATG 1 cut(s) 302
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 2 cut(s) 391, 394
PspPI GGNCC 2 cut(s) 80, 208
SalI GTCGAC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 397
SatI GCNGC 2 cut(s) 390, 393
Sau96I GGNCC 2 cut(s) 80, 208
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 328
SetI ASST 8 cut(s) 9, 46, 74, 121, 129, 201, 253, 354
SinI GGWCC 1 cut(s) 208
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 82
TaqI TCGA 4 cut(s) 40, 130, 229, 254
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TscAI CASTG 2 cut(s) 37, 57
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 389, 392
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 37, 57
VpaK11BI GGWCC 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 40
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.