Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Reverse (-)

64334154 .. 64335230

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGGTCAGAGTATCTTGCCAAACTTTTGTCCAAGCATTTGAAGTCTCTCATCAGGCAGCGCATACCAAGGATCATTGCTTTGATTAATAAGACCATTAGTGAATTAAATGTAGAGCCGGATCGCATTGGCAGGCCAATTGGCATAGATTCAGGGGTAACAGATGTTGACCTTGTAAAGATAGTTTTCTTGTTCATGCAACATACAGATTACACGTGTTACTTTATGTACAGGTCCAATTGTACACTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

84

Amino Acids

9.72

Weight (kDa)

9.06

Isoelectric Point (pI)

21.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	1 - 51	6.2e-06	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	80, 129
AcvI	CACGTG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	230, 244
AflIII	ACRYGT	2 cut(s)	213, 215
AgsI	TTSAA	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	80, 129
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	58
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	51
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	136
Bsp1407I	TGTACA	2 cut(s)	228, 242
Bsp143I	GATC	2 cut(s)	72, 121
BspANI	GGCC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	80, 129
BsrDI	GCAATG	1 cut(s)	75
BsrGI	TGTACA	2 cut(s)	228, 242
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	72, 121
BssT1I	CCWWGG	1 cut(s)	68
BstAUI	TGTACA	2 cut(s)	228, 242
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	75, 124
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	72, 121
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	229, 243
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	2 cut(s)	118, 136
CviKI_1	RGCY	2 cut(s)	118, 136
CviQI	GTAC	2 cut(s)	229, 243
DpnI	GATC	2 cut(s)	74, 123
DpnII	GATC	2 cut(s)	72, 121
Eco130I	CCWWGG	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	234
Eco72I	CACGTG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	199
FaiI	YATR	5 cut(s)	65, 146, 197, 204, 227
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	169, 245
Hpy188I	TCNGA	1 cut(s)	10
Hpy8I	GTNNAC	2 cut(s)	169, 245
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	72, 121
LpnPI	CCDG	5 cut(s)	40, 118, 132, 138, 217
Lsp1109I	GCAGC	1 cut(s)	70
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	157, 218
MalI	GATC	2 cut(s)	74, 123
MboI	GATC	2 cut(s)	72, 121
MfeI	CAATTG	2 cut(s)	138, 238
MluCI	AATT	3 cut(s)	104, 138, 238
MseI	TTAA	2 cut(s)	87, 107
MspI	CCGG	1 cut(s)	119
MunI	CAATTG	2 cut(s)	138, 238
NdeII	GATC	2 cut(s)	72, 121
NlaIII	CATG	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	60
PmaCI	CACGTG	1 cut(s)	216
PmlI	CACGTG	1 cut(s)	216
Ppu21I	YACGTR	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	87
PspCI	CACGTG	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	234
RsaI	GTAC	2 cut(s)	230, 244
RsaNI	GTAC	2 cut(s)	229, 243
SaqAI	TTAA	2 cut(s)	87, 107
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	72, 121
Sau96I	GGNCC	1 cut(s)	234
SetI	ASST	3 cut(s)	174, 218, 236
SinI	GGWCC	1 cut(s)	234
Sse9I	AATT	3 cut(s)	104, 138, 238
StyI	CCWWGG	1 cut(s)	68
TaiI	ACGT	1 cut(s)	218
TasI	AATT	3 cut(s)	104, 138, 238
TatI	WGTACW	2 cut(s)	228, 242
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	2 cut(s)	87, 107
Tru9I	TTAA	2 cut(s)	87, 107
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	234
VspI	ATTAAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.