Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Reverse (-)

20254786 .. 20258947

Gene Structure 4162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG213500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCTACGTACTCCTCCGAAACGGAGACAGAAATCCAATTCGTCGCCGATGAAGTTGAGTAAACCAAAAGCAATCTCCAGTGTTCGTCGACCTCAACCACTGAGAACGACAAGTTTACGCTACGACGGGCCGGGTTGGGCGAGTTCCAATCTGATTTATCCTCCAGCTCCGGAGCTTCGACGGGAAGAGCTAGAGCGAATGCTGTGCAGAAAAGAGTACCTAAAAGTACATTTCAAACCTGATTTTCATCTTTTTATACCTATAGTTATGGATAGCTATGTAAGAGCTCAATCAGTTCAGAAAGCATATAGGTTTTCCGAAATTCCAAGCCGATCAATAAAACAAACAAGACAAAAGGTTCTCTTGACAGCCACTACAATCCCTTGCGTTCACCTTATTAAGAAGACTTCGATGATCACTCACCAAAAACATGTTGAAGAAGATTGGCCAAAAGTAGATGGAATTATGCTACAGATCATAATGATGGTGCACACAGTTCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

19.63

Weight (kDa)

10.34

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	321
AfaI	GTAC	3 cut(s)	10, 218, 228
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	3 cut(s)	235, 437, 500
AluBI	AGCT	5 cut(s)	167, 175, 190, 276, 287
AluI	AGCT	5 cut(s)	167, 175, 190, 276, 287
Alw21I	GWGCWC	2 cut(s)	289, 492
Alw26I	GTCTC	1 cut(s)	19
Alw44I	GTGCAC	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	2 cut(s)	128, 446
ApaLI	GTGCAC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	383, 413
BaeGI	GKGCMC	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	2 cut(s)	289, 492
BccI	CCATC	2 cut(s)	452, 478
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	261, 470
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	2 cut(s)	61, 147
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	492
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	130, 448
BsiHKAI	GWGCWC	2 cut(s)	289, 492
BsiSI	CCGG	2 cut(s)	131, 170
BsmAI	GTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	130, 448
Bsp1286I	GDGCHC	2 cut(s)	289, 492
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	332, 414, 474
BspANI	GGCC	2 cut(s)	130, 448
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	169
BspQI	GCTCTTC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	78
BssMI	GATC	3 cut(s)	332, 414, 474
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	335, 417, 477
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	3 cut(s)	332, 414, 474
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	2 cut(s)	261, 470
BstSLI	GKGCMC	1 cut(s)	492
BstSNI	TACGTA	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	130, 448
BtsIMutI	CAGTG	2 cut(s)	85, 98
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	9, 217, 227
CviAII	CATG	1 cut(s)	431
CviJI	RGCY	9 cut(s)	130, 167, 175, 190, 276, 287, 330, 371, 448
CviKI_1	RGCY	9 cut(s)	130, 167, 175, 190, 276, 287, 330, 371, 448
CviQI	GTAC	3 cut(s)	9, 217, 227
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	3 cut(s)	334, 416, 476
DpnII	GATC	3 cut(s)	332, 414, 474
EaeI	YGGCCR	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	287
Eco105I	TACGTA	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	1 cut(s)	434
FaiI	YATR	9 cut(s)	257, 263, 269, 279, 307, 309, 432, 467, 479
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	61, 147
HaeIII	GGCC	2 cut(s)	130, 448
HapII	CCGG	2 cut(s)	131, 170
Hin1II	CATG	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	131, 170
HphI	GGTGA	2 cut(s)	383, 413
Hpy166II	GTNNAC	5 cut(s)	62, 89, 116, 391, 490
Hpy188I	TCNGA	4 cut(s)	18, 153, 300, 319
Hpy188III	TCNNGA	2 cut(s)	170, 364
Hpy8I	GTNNAC	5 cut(s)	62, 89, 116, 391, 490
Hpy99I	CGWCG	4 cut(s)	46, 90, 128, 183
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	207, 490
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	434
Kpn2I	TCCGGA	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	332, 414, 474
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	172, 172
LpnPI	CCDG	5 cut(s)	91, 144, 177, 183, 252
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	7
MalI	GATC	3 cut(s)	334, 416, 476
MboI	GATC	3 cut(s)	332, 414, 474
MboII	GAAGA	4 cut(s)	197, 415, 449, 452
MhlI	GDGCHC	2 cut(s)	289, 492
MlsI	TGGCCA	1 cut(s)	448
MluCI	AATT	3 cut(s)	37, 321, 462
MluNI	TGGCCA	1 cut(s)	448
MnlI	CCTC	3 cut(s)	24, 102, 171
Mox20I	TGGCCA	1 cut(s)	448
MroI	TCCGGA	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	448
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	1 cut(s)	448
MspI	CCGG	2 cut(s)	131, 170
MspR9I	CCNGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	332, 414, 474
NlaIII	CATG	1 cut(s)	434
NspI	RCATGY	1 cut(s)	434
PciI	ACATGT	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	8
PscI	ACATGT	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	128
RsaI	GTAC	3 cut(s)	10, 218, 228
RsaNI	GTAC	3 cut(s)	9, 217, 227
RseI	CAYNNNNRTG	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	332, 414, 474
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	289, 492
SfcI	CTRYAG	2 cut(s)	261, 470
SmiMI	CAYNNNNRTG	1 cut(s)	482
SnaBI	TACGTA	1 cut(s)	8
Sse9I	AATT	3 cut(s)	37, 321, 462
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	3 cut(s)	88, 178, 410
TasI	AATT	3 cut(s)	37, 321, 462
TatI	WGTACW	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	85, 105
TspDTI	ATGAA	2 cut(s)	65, 236
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	85, 105
VneI	GTGCAC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.