Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Forward (+)

3288234 .. 3293033

Gene Structure 4800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCCAGATTGGAGAGCTTGATCGGCCTCGTCAACCGAATCCAGCGCGCCTGCACCGCCCTCGGCGATCACGGCGGCGAGGGTATGTCCCTATGGGAAGCTCTCCCTTCCGTCGCCGTCGTCGGAGGCCAGAGTTCCGGAAAGTCTTCGGTTTTGGAAAGCGTGGTGGGGAGAGACTTCTTGCCTCGTGGATCAGGTATTGTGACTAGGAGGCCATTAGTGTTGCAGCTTCATCGGTTAGAGGATGGGCGGTCTGAATATGCAGAGTTTCTTCATGCGCCCAGGAAGAAGTACACTGATTTTGCTGCTGTACGCAAGGAGATCGCAGATGAGACTGATCGTATAACTGGCAAATCAAAGCAAATCTCTAACATCCCGATTCATCTCAGCATATATTCCCCAAATGTTGTAAACTTGACTCTCATAGATCTTCCTGGATTGACCAAGGTTGCTGTAGAGGGACAACCAGACAGCATTGTTGAGGATATTGAGAATATGAATTTTAACTGTCAGGGGCTGTTAGCTTTTTGTTATTTCCTTAATATTTTTTATATTTTTTTATTTCATGAATATATAAGTACAAGTATTTCATCTATCTATTCCCACCCTTCACCTCCCTTAGACTTTAGACTCTATTTTTTGTTTCTAACCATTTCCTTCAGGCGACCTGGTGGAGATCGAATATACAAAGTTTTTGACCACCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTGATCGTCATCTTTCTGTAAAGAATGTCCAAAAAGTTGTTACAGAGGCTGATGGCTATCAGCCCCATTTGATTGCTCCAGAACAAGGATACCGCAGACTTATTGATGGAGCTATCGTCTATTTTAAAGGACCAGCTGAAGCCTCTGTCGATGCTGAATTGAGACGATTCCCTACACTTCAGTCTGACATTGCAGCAGCTTCCACAGAAGCATTGGAAAGATTCCGTGATGAAAGCAGGAAAACAGTTACACGGCTGGTGGAAATGGAGTCTAGCTACCTAACGGTGGAATTTTTCAGGAAGCTTAATATGGAAGGGGACAGAAATCAAAACCAAACAGGACCAAATGCAGACAAACATAGAAAAGAACCGCCACCAAATATGGACATGGTTGGGGATAATTATCTGAGGAGGATTGCATCAAACGTCAATTCTTATATCAATATGGTTTGTGAGACTCTGAGGAATTCGATTCCCAAGGCTGTTGTTCACTGTCAAGTTCGAGAGGCCAAAAGATCTCTGCTCAACTACTTTTACACTCAAATTGGGAGGCAAGAGAAGGAGAGGCTAGGTGCAATGTTGGATGAGGATCCAGCACTCATGGAAAAGCGAACACTCATTGCTAAACGGCTTGAACTGTACAAGTCAGCCAGAGATGAGATTGATTCTGTCGCATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

472

Amino Acids

53.42

Weight (kDa)

8.41

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	38 - 161	2.7e-37	Dynamin family
Dynamin_M	PF01031	224 - 340	5.8e-12	Dynamin central region
GED	PF02212	379 - 468	2.3e-24	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	5 cut(s)	57, 75, 250, 826, 1103
AclWI	GGATC	3 cut(s)	199, 1316, 1329
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	499, 1022, 1198
AcuI	CTGAAG	3 cut(s)	643, 891, 896
AfaI	GTAC	4 cut(s)	293, 312, 580, 1373
AfiI	CCNNNNNNNGG	2 cut(s)	818, 1018
AgsI	TTSAA	1 cut(s)	1367
AjnI	CCWGG	3 cut(s)	281, 433, 667
Alw26I	GTCTC	4 cut(s)	168, 326, 889, 1181
AlwI	GGATC	3 cut(s)	199, 1316, 1329
AlwNI	CAGNNNCTG	2 cut(s)	517, 782
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	5 cut(s)	3, 25, 127, 212, 1239
ApeKI	GCWGC	5 cut(s)	226, 305, 713, 926, 929
ApoI	RAATTY	3 cut(s)	499, 1022, 1198
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	3 cut(s)	48, 50, 280
AspS9I	GGNCC	2 cut(s)	863, 1073
AsuHPI	GGTGA	1 cut(s)	603
AvaII	GGWCC	2 cut(s)	863, 1073
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	1321
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	5 cut(s)	238, 292, 700, 938, 941
BccI	CCATC	3 cut(s)	239, 779, 833
BceAI	ACGGC	4 cut(s)	88, 101, 1001, 1376
BcgI	CGANNNNNNTGC	6 cut(s)	43, 77, 215, 249, 304, 338
BciT130I	CCWGG	3 cut(s)	283, 435, 669
BciVI	GTATCC	1 cut(s)	815
BcoDI	GTCTC	4 cut(s)	168, 326, 889, 1181
BfaI	CTAG	3 cut(s)	207, 1005, 1301
BfmI	CTRYAG	1 cut(s)	453
BfuI	GTATCC	1 cut(s)	815
BglII	AGATCT	2 cut(s)	427, 1247
BisI	GCNGC	6 cut(s)	76, 227, 306, 714, 927, 930
BlsI	GCNGC	6 cut(s)	77, 228, 307, 715, 928, 931
Bme1390I	CCNGG	3 cut(s)	283, 435, 669
Bme18I	GGWCC	2 cut(s)	863, 1073
BmgT120I	GGNCC	2 cut(s)	863, 1073
BmiI	GGNNCC	1 cut(s)	1323
BmrFI	CCNGG	3 cut(s)	283, 435, 669
BmsI	GCATC	2 cut(s)	874, 1160
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	795
BsaBI	GATNNNNATC	4 cut(s)	741, 789, 1134, 1320
BsaJI	CCNNGG	4 cut(s)	61, 281, 444, 1209
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	2 cut(s)	818, 1018
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	3 cut(s)	921, 1314, 1350
Bse8I	GATNNNNATC	4 cut(s)	741, 789, 1134, 1320
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	3 cut(s)	283, 435, 669
BseDI	CCNNGG	4 cut(s)	61, 281, 444, 1209
BseGI	GGATG	3 cut(s)	250, 372, 1321
BseJI	GATNNNNATC	4 cut(s)	741, 789, 1134, 1320
BseLI	CCNNNNNNNGG	2 cut(s)	818, 1018
BseMI	GCAATG	3 cut(s)	921, 1314, 1350
BseMII	CTCAG	3 cut(s)	400, 1130, 1184
BseNI	ACTGG	1 cut(s)	352
BsePI	GCGCGC	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	1156
BseXI	GCAGC	5 cut(s)	238, 292, 700, 938, 941
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	5 cut(s)	5, 27, 129, 214, 1241
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	3 cut(s)	73, 474, 1064
BslI	CCNNNNNNNGG	2 cut(s)	818, 1018
BsmAI	GTCTC	4 cut(s)	168, 326, 889, 1181
BsmBI	CGTCTC	1 cut(s)	889
BsmFI	GGGAC	3 cut(s)	73, 474, 1064
BsnI	GGCC	5 cut(s)	5, 27, 129, 214, 1241
Bsp13I	TCCGGA	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	1371
BspACI	CCGC	5 cut(s)	57, 75, 250, 826, 1103
BspANI	GGCC	5 cut(s)	5, 27, 129, 214, 1241
BspCNI	CTCAG	3 cut(s)	399, 1131, 1185
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	1323
BspPI	GGATC	3 cut(s)	199, 1316, 1329
BsrDI	GCAATG	3 cut(s)	921, 1314, 1350
BsrGI	TGTACA	1 cut(s)	1371
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	4 cut(s)	61, 281, 444, 1209
BssHII	GCGCGC	1 cut(s)	46
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	444, 1209
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	283, 435, 669
Bst4CI	ACNGT	5 cut(s)	509, 979, 1018, 1226, 1371
BstAUI	TGTACA	1 cut(s)	1371
BstC8I	GCNNGC	2 cut(s)	48, 52
BstDEI	CTNAG	4 cut(s)	386, 619, 1139, 1193
BstF5I	GGATG	3 cut(s)	250, 372, 1321
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	3 cut(s)	48, 50, 280
BstMAI	GTCTC	4 cut(s)	168, 326, 889, 1181
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 56, 72
BstNI	CCWGG	3 cut(s)	283, 435, 669
BstSCI	CCNGG	3 cut(s)	281, 433, 667
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	5 cut(s)	238, 292, 700, 938, 941
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	3 cut(s)	427, 1247, 1321
BstYI	RGATCY	3 cut(s)	427, 1247, 1321
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	5 cut(s)	5, 27, 129, 214, 1241
BtsCI	GGATG	3 cut(s)	250, 372, 1321
BtsIMutI	CAGTG	2 cut(s)	294, 1222
Cac8I	GCNNGC	2 cut(s)	48, 52
CaiI	CAGNNNCTG	2 cut(s)	517, 782
CciI	TCATGA	1 cut(s)	565
CfoI	GCGC	3 cut(s)	48, 50, 280
Cfr13I	GGNCC	2 cut(s)	863, 1073
CsiI	ACCWGGT	1 cut(s)	667
Csp6I	GTAC	4 cut(s)	292, 311, 579, 1372
CviAII	CATG	5 cut(s)	275, 566, 1120, 1333, 1407
CviQI	GTAC	4 cut(s)	292, 311, 579, 1372
DdeI	CTNAG	4 cut(s)	386, 619, 1139, 1193
DraI	TTTAAA	2 cut(s)	720, 859
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	444, 1209
Eco47I	GGWCC	2 cut(s)	863, 1073
Eco57I	CTGAAG	3 cut(s)	643, 891, 896
EcoRI	GAATTC	1 cut(s)	1198
EcoRII	CCWGG	3 cut(s)	281, 433, 667
EcoT14I	CCWWGG	2 cut(s)	444, 1209
ErhI	CCWWGG	2 cut(s)	444, 1209
Esp3I	CGTCTC	1 cut(s)	889
FaeI	CATG	5 cut(s)	278, 569, 1123, 1336, 1410
FaqI	GGGAC	3 cut(s)	73, 474, 1064
FatI	CATG	5 cut(s)	274, 565, 1119, 1332, 1406
Fnu4HI	GCNGC	6 cut(s)	76, 227, 306, 714, 927, 930
FokI	GGATG	3 cut(s)	257, 359, 1328
Fsp4HI	GCNGC	6 cut(s)	76, 227, 306, 714, 927, 930
FspBI	CTAG	3 cut(s)	207, 1005, 1301
GlaI	GCGC	3 cut(s)	47, 49, 279
GluI	GCNGC	6 cut(s)	76, 227, 306, 714, 927, 930
GsuI	CTGGAG	1 cut(s)	795
HaeIII	GGCC	5 cut(s)	5, 27, 129, 214, 1241
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	3 cut(s)	48, 50, 280
Hin1II	CATG	5 cut(s)	278, 569, 1123, 1336, 1410
Hin6I	GCGC	3 cut(s)	46, 48, 278
HinP1I	GCGC	3 cut(s)	46, 48, 278
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	1034
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	603
Hpy166II	GTNNAC	4 cut(s)	34, 294, 412, 1222
Hpy188I	TCNGA	5 cut(s)	125, 256, 919, 1140, 1194
Hpy188III	TCNNGA	6 cut(s)	138, 376, 566, 812, 1030, 1235
Hpy8I	GTNNAC	4 cut(s)	34, 294, 412, 1222
Hpy99I	CGWCG	3 cut(s)	116, 122, 125
HpyAV	CCTTC	5 cut(s)	117, 618, 667, 1040, 1285
HpyCH4III	ACNGT	5 cut(s)	509, 979, 1018, 1226, 1371
HpyCH4IV	ACGT	1 cut(s)	1158
HpyCH4V	TGCA	7 cut(s)	54, 226, 263, 926, 1082, 1151, 1307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 56, 72
HpyF3I	CTNAG	4 cut(s)	386, 619, 1139, 1193
HpySE526I	ACGT	1 cut(s)	1158
Hsp92II	CATG	5 cut(s)	278, 569, 1123, 1336, 1410
HspAI	GCGC	3 cut(s)	46, 48, 278
Kpn2I	TCCGGA	1 cut(s)	137
LmnI	GCTCC	3 cut(s)	732, 814, 842
Lsp1109I	GCAGC	5 cut(s)	238, 292, 700, 938, 941
LweI	GCATC	2 cut(s)	874, 1160
MabI	ACCWGGT	1 cut(s)	667
MaeI	CTAG	3 cut(s)	207, 1005, 1301
MaeII	ACGT	1 cut(s)	1158
MaeIII	GTNAC	3 cut(s)	202, 772, 979
MboII	GAAGA	4 cut(s)	138, 263, 298, 422
MflI	RGATCY	3 cut(s)	427, 1247, 1321
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	499, 704, 890, 1022, 1132, 1162, 1198, 1275
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	412, 624, 1010, 1183
MmeI	TCCRAC	2 cut(s)	103, 1293
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	504, 540, 719, 858, 1038
MslI	CAYNNNNRTG	1 cut(s)	1411
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	713, 869
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	3 cut(s)	283, 435, 669
MvaI	CCWGG	3 cut(s)	283, 435, 669
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	24, 56, 72
NlaIII	CATG	5 cut(s)	278, 569, 1123, 1336, 1410
NlaIV	GGNNCC	1 cut(s)	1323
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	202
PagI	TCATGA	1 cut(s)	565
PauI	GCGCGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	6 cut(s)	39, 379, 900, 954, 1204, 1397
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	77, 228, 307, 715, 928, 931
PleI	GAGTC	4 cut(s)	412, 624, 1009, 1183
PpsI	GAGTC	4 cut(s)	412, 624, 1009, 1183
Psp6I	CCWGG	3 cut(s)	281, 433, 667
PspGI	CCWGG	3 cut(s)	281, 433, 667
PspN4I	GGNNCC	1 cut(s)	1323
PspPI	GGNCC	2 cut(s)	863, 1073
PstNI	CAGNNNCTG	2 cut(s)	517, 782
PsuI	RGATCY	3 cut(s)	427, 1247, 1321
PteI	GCGCGC	1 cut(s)	46
PvuII	CAGCTG	2 cut(s)	713, 869
RsaI	GTAC	4 cut(s)	293, 312, 580, 1373
RsaNI	GTAC	4 cut(s)	292, 311, 579, 1372
RseI	CAYNNNNRTG	1 cut(s)	1411
SaqAI	TTAA	5 cut(s)	504, 540, 719, 858, 1038
SatI	GCNGC	6 cut(s)	76, 227, 306, 714, 927, 930
Sau96I	GGNCC	2 cut(s)	863, 1073
SchI	GAGTC	4 cut(s)	412, 624, 1010, 1183
ScrFI	CCNGG	3 cut(s)	283, 435, 669
SexAI	ACCWGGT	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	874, 1160
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	2 cut(s)	863, 1073
SmiMI	CAYNNNNRTG	1 cut(s)	1411
Sse9I	AATT	8 cut(s)	499, 704, 890, 1022, 1132, 1162, 1198, 1275
SsiI	CCGC	5 cut(s)	57, 75, 250, 826, 1103
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	3 cut(s)	207, 1005, 1301
StyD4I	CCNGG	3 cut(s)	281, 433, 667
StyI	CCWWGG	2 cut(s)	444, 1209
TaaI	ACNGT	5 cut(s)	509, 979, 1018, 1226, 1371
TaiI	ACGT	1 cut(s)	1161
TaqI	TCGA	4 cut(s)	679, 882, 1202, 1234
TasI	AATT	8 cut(s)	499, 704, 890, 1022, 1132, 1162, 1198, 1275
TatI	WGTACW	3 cut(s)	291, 578, 1371
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	6 cut(s)	39, 379, 900, 954, 1204, 1397
Tru1I	TTAA	5 cut(s)	504, 540, 719, 858, 1038
Tru9I	TTAA	5 cut(s)	504, 540, 719, 858, 1038
TscAI	CASTG	2 cut(s)	301, 1229
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	5 cut(s)	226, 305, 713, 926, 929
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	8 cut(s)	221, 263, 371, 512, 554, 579, 582, 978
TspGWI	ACGGA	2 cut(s)	100, 947
TspRI	CASTG	2 cut(s)	301, 1229
VpaK11BI	GGWCC	2 cut(s)	863, 1073
XapI	RAATTY	3 cut(s)	499, 1022, 1198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	145
XspI	CTAG	3 cut(s)	207, 1005, 1301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.