Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Reverse (-)

25603919 .. 25606012

Gene Structure 2094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG262100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATGGCTGCTCGTAGGAAGGAGCAGGAATACTTTGAAAATAGTCCTGATTATGGACACTTGGCACATAGAATGGGGTCAGAGTATCTCGCCAAACTTTTGTCTAAGCATTTGGAGACTGTCATCAGGCATCGGATACCTAGTATCATTGCTTTGATAAATAAGACCATTAGTGAACTTAATGCAGAGCTGGATCGCATTGGCAGGCCAATTGGCATAGATTCAGGGGCCCAATTGTACACTATTTTAGAACTATGTCGTGCATTTGACCGTGTATTCAAGGAACACCTGGATATAGGCTCTCTCCCATTTGATCGGCATCTTTCTGTAAAGAATGTCCAAAAAGTTGTTACAGAGGCTGATGGCTATCAGCCCCATTTGATTGCTCCAGAACAAGGATACCGCAGACTTATTGATGGAGCTATCGTCTATTTTAAAGGACCAGCTGAAGCCTCTGTGGATGCTGTGCACTTTGTTTTGAAAGAACTTGTACATAAGTCAATAGCTGAGACAGAGGAATTGAGACGATTCCCTACACTTCAGTCTGACATTGCAGCAGCTTCCACAGAAGCATTGGAAAGATTCAGTGATGAAAGCAGGAAGACAGTTACACGGCTGGTGGAAATGGAGTCTAGCTACCTAACGGTGGAATTTTTCAGGAAGCTTAATATGGAAGGGGACAGAAATCAAAACCAAACAGGACCAAATGCAGACAAAAATAGAAAAGAACCGCCACCAAATATGGACATGGTTGGGGATAATTATCTCAGGAGGATCGAAGGAGAGGCACTCATGGAAAAGCGAACGCTTATTGCTAAACGGCTTGAACTGTACAAGTCAGCCAGAGATGAGATTGACTCTGTCGCATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

291

Amino Acids

33.36

Weight (kDa)

6.34

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	2 - 98	1.8e-20	Dynamin central region
Dynamin_M	PF01031	102 - 216	5.8e-17	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	403, 731
AclWI	GGATC	2 cut(s)	201, 782
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	2 cut(s)	468, 524
AfaI	GTAC	3 cut(s)	239, 492, 833
AfiI	CCNNNNNNNGG	3 cut(s)	53, 395, 646
AgsI	TTSAA	4 cut(s)	38, 280, 481, 827
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	7 cut(s)	190, 422, 446, 506, 560, 636, 664
AluI	AGCT	7 cut(s)	190, 422, 446, 506, 560, 636, 664
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	3 cut(s)	110, 503, 517
Alw44I	GTGCAC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	201, 782
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	2 cut(s)	206, 228
ApaI	GGGCCC	1 cut(s)	232
ApaLI	GTGCAC	1 cut(s)	467
ApeKI	GCWGC	3 cut(s)	8, 554, 557
ApoI	RAATTY	1 cut(s)	650
AspS9I	GGNCC	4 cut(s)	228, 229, 440, 701
AvaII	GGWCC	2 cut(s)	440, 701
BaeGI	GKGCMC	2 cut(s)	232, 471
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	566, 569
BccI	CCATC	2 cut(s)	356, 410
BceAI	ACGGC	2 cut(s)	629, 836
BciT130I	CCWGG	1 cut(s)	290
BciVI	GTATCC	2 cut(s)	129, 392
BcoDI	GTCTC	3 cut(s)	110, 503, 517
BfaI	CTAG	2 cut(s)	141, 633
BfuI	GTATCC	2 cut(s)	129, 392
BisI	GCNGC	3 cut(s)	9, 555, 558
BlsI	GCNGC	3 cut(s)	10, 556, 559
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	440, 701
BmgT120I	GGNCC	4 cut(s)	228, 229, 440, 701
BmiI	GGNNCC	2 cut(s)	229, 230
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	3 cut(s)	139, 328, 451
BpiI	GAAGAC	1 cut(s)	608
BplI	GAGNNNNNCTC	4 cut(s)	774, 806, 842, 874
BpmI	CTGGAG	1 cut(s)	372
BsaBI	GATNNNNATC	3 cut(s)	318, 366, 762
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 395, 646
Bse3DI	GCAATG	2 cut(s)	147, 549
Bse8I	GATNNNNATC	3 cut(s)	318, 366, 762
BseBI	CCWGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	3 cut(s)	318, 366, 762
BseLI	CCNNNNNNNGG	3 cut(s)	53, 395, 646
BseMI	GCAATG	2 cut(s)	147, 549
BseMII	CTCAG	2 cut(s)	498, 781
BseSI	GKGCMC	2 cut(s)	232, 471
BseXI	GCAGC	2 cut(s)	566, 569
BshFI	GGCC	2 cut(s)	208, 230
BsiHKAI	GWGCWC	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	3 cut(s)	53, 395, 646
BsmAI	GTCTC	3 cut(s)	110, 503, 517
BsmBI	CGTCTC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	692
BsnI	GGCC	2 cut(s)	208, 230
Bsp120I	GGGCCC	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	232, 471
Bsp1407I	TGTACA	3 cut(s)	237, 490, 831
Bsp143I	GATC	3 cut(s)	193, 313, 774
BspACI	CCGC	2 cut(s)	403, 731
BspANI	GGCC	2 cut(s)	208, 230
BspCNI	CTCAG	2 cut(s)	499, 780
BspLI	GGNNCC	2 cut(s)	229, 230
BspPI	GGATC	2 cut(s)	201, 782
BsrDI	GCAATG	2 cut(s)	147, 549
BsrGI	TGTACA	3 cut(s)	237, 490, 831
BssMI	GATC	3 cut(s)	193, 313, 774
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	5 cut(s)	121, 272, 607, 646, 831
BstAUI	TGTACA	3 cut(s)	237, 490, 831
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	105, 507, 767
BstF5I	GGATG	1 cut(s)	466
BstKTI	GATC	3 cut(s)	196, 316, 777
BstMAI	GTCTC	3 cut(s)	110, 503, 517
BstMBI	GATC	3 cut(s)	193, 313, 774
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstSLI	GKGCMC	2 cut(s)	232, 471
BstV1I	GCAGC	2 cut(s)	566, 569
BstV2I	GAAGAC	1 cut(s)	608
BsuI	GTATCC	2 cut(s)	129, 392
BsuRI	GGCC	2 cut(s)	208, 230
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	1 cut(s)	206
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr13I	GGNCC	4 cut(s)	228, 229, 440, 701
Csp6I	GTAC	3 cut(s)	238, 491, 832
CviAII	CATG	3 cut(s)	748, 793, 867
CviQI	GTAC	3 cut(s)	238, 491, 832
DdeI	CTNAG	3 cut(s)	105, 507, 767
DpnI	GATC	3 cut(s)	195, 315, 776
DpnII	GATC	3 cut(s)	193, 313, 774
DraI	TTTAAA	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	440, 701
Eco57I	CTGAAG	2 cut(s)	468, 524
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	517
FaeI	CATG	3 cut(s)	751, 796, 870
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	3 cut(s)	747, 792, 866
Fnu4HI	GCNGC	3 cut(s)	9, 555, 558
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	9, 555, 558
FspBI	CTAG	2 cut(s)	141, 633
GluI	GCNGC	3 cut(s)	9, 555, 558
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	208, 230
Hin1II	CATG	3 cut(s)	751, 796, 870
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	5 cut(s)	221, 528, 582, 629, 857
Hpy166II	GTNNAC	3 cut(s)	176, 240, 469
Hpy188I	TCNGA	3 cut(s)	82, 135, 547
Hpy188III	TCNNGA	4 cut(s)	47, 389, 658, 769
Hpy8I	GTNNAC	3 cut(s)	176, 240, 469
HpyAV	CCTTC	3 cut(s)	13, 668, 773
HpyCH4III	ACNGT	5 cut(s)	121, 272, 607, 646, 831
HpyCH4V	TGCA	5 cut(s)	185, 263, 469, 554, 710
HpyF3I	CTNAG	3 cut(s)	105, 507, 767
Hsp92II	CATG	3 cut(s)	751, 796, 870
Kzo9I	GATC	3 cut(s)	193, 313, 774
LmnI	GCTCC	3 cut(s)	22, 391, 419
Lsp1109I	GCAGC	2 cut(s)	566, 569
LweI	GCATC	3 cut(s)	139, 328, 451
MaeI	CTAG	2 cut(s)	141, 633
MaeIII	GTNAC	2 cut(s)	349, 607
MalI	GATC	3 cut(s)	195, 315, 776
MboI	GATC	3 cut(s)	193, 313, 774
MboII	GAAGA	1 cut(s)	613
MfeI	CAATTG	2 cut(s)	210, 233
MhlI	GDGCHC	2 cut(s)	232, 471
MluCI	AATT	5 cut(s)	210, 233, 518, 650, 760
MlyI	GAGTC	2 cut(s)	638, 851
MnlI	CCTC	5 cut(s)	349, 463, 508, 765, 778
MseI	TTAA	3 cut(s)	180, 435, 666
MslI	CAYNNNNRTG	1 cut(s)	871
MspA1I	CMGCKG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	2 cut(s)	210, 233
MvaI	CCWGG	1 cut(s)	290
NdeII	GATC	3 cut(s)	193, 313, 774
NlaIII	CATG	3 cut(s)	751, 796, 870
NlaIV	GGNNCC	2 cut(s)	229, 230
PfeI	GAWTC	3 cut(s)	221, 528, 582
PflFI	GACNNNGTC	1 cut(s)	860
PkrI	GCNGC	3 cut(s)	10, 556, 559
PleI	GAGTC	2 cut(s)	637, 851
PpsI	GAGTC	2 cut(s)	637, 851
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	229, 230
PspOMI	GGGCCC	1 cut(s)	228
PspPI	GGNCC	4 cut(s)	228, 229, 440, 701
PstNI	CAGNNNCTG	1 cut(s)	359
PsyI	GACNNNGTC	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	3 cut(s)	239, 492, 833
RsaNI	GTAC	3 cut(s)	238, 491, 832
RseI	CAYNNNNRTG	1 cut(s)	871
SaqAI	TTAA	3 cut(s)	180, 435, 666
SatI	GCNGC	3 cut(s)	9, 555, 558
Sau3AI	GATC	3 cut(s)	193, 313, 774
Sau96I	GGNCC	4 cut(s)	228, 229, 440, 701
SchI	GAGTC	2 cut(s)	638, 851
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	232, 471
SfaNI	GCATC	3 cut(s)	139, 328, 451
SinI	GGWCC	2 cut(s)	440, 701
SmiMI	CAYNNNNRTG	1 cut(s)	871
Sse9I	AATT	5 cut(s)	210, 233, 518, 650, 760
SsiI	CCGC	2 cut(s)	403, 731
SspMI	CTAG	2 cut(s)	141, 633
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	5 cut(s)	121, 272, 607, 646, 831
TaqI	TCGA	1 cut(s)	777
TasI	AATT	5 cut(s)	210, 233, 518, 650, 760
TatI	WGTACW	3 cut(s)	237, 490, 831
TfiI	GAWTC	3 cut(s)	221, 528, 582
Tru1I	TTAA	3 cut(s)	180, 435, 666
Tru9I	TTAA	3 cut(s)	180, 435, 666
TscAI	CASTG	1 cut(s)	592
TseI	GCWGC	3 cut(s)	8, 554, 557
TspDTI	ATGAA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	592
Tth111I	GACNNNGTC	1 cut(s)	860
VneI	GTGCAC	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	440, 701
XapI	RAATTY	1 cut(s)	650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XspI	CTAG	2 cut(s)	141, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.