Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003082

Physical Location & Seq

Genomic Coordinates Forward (+)

20459980 .. 20464801

Gene Structure 4822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG186100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGACAGATAAATCAAACCGTATTTCTAATGTTCCTATTCATCTCAACATATACTCCCCAAATGTTGTCAATTTAACATTGATAGATTTGCCTGGCTTAACTAAGGTTGCTGTAGAGGGGCAGCCAGAGAGTATTGTTCAAGACATAGAAAACATGGTTCGTTCTTATATAGCAAAGGCCCAATTATATACTATCTTAGAGCTGTGCCGGGCATTTGACCAAATATTCAAGGAACACTTGGATGGAGGAGTGATTGTCCGAAGGCTCAGAATCAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

93

Amino Acids

10.59

Weight (kDa)

7.92

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	4 - 62	4.2e-11	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14830
fragaria_vesca	FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500 FvH4_4g33500
malus_domestica	MD13G1020000.v1.1 MD16G1018100.v1.1
prunus_persica	Prupe.1G333900_v2.0.a1 Prupe.1G333900_v2.0.a1
pyrus_communis	pycom13g01690 pycom16g01640
rosa_chinensis	RchiOBHm_Chr3g0480151 RchiOBHm_Chr3g0480161 RchiOBHm_Chr4g0390411 RchiOBHm_Chr4g0416491 RchiOBHm_Chr4g0442811 RchiOBHm_Chr4g0442891
rosa_laevigata	RLG00000005982 RLG00000012829
rosa_multiflora	Rmu_sc0020879.1_g000001 Rmu_sc0035241.1_g000001 Rmu_ssc0000204.1_g000018
rosa_roxburghii	Rroxscaffold_5G00383590 Rroxscaffold_7G00158920
rosa_rugosa	Rorug04G0343300
rosa_samantha	Rh2BG213500 Rh3AG232300 Rh3CG262100 Rh3DG257800 Rh4AG395900 Rh4BG408800 Rh4CG424400 Rh4DG402900 Rh5BG186100
rosa_wichuraiana	Rw3G020860 Rw4G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	140, 229
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	93, 209
BmgT120I	GGNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	93, 209
BpuMI	CCSGG	1 cut(s)	209
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 240, 270
BseBI	CCWGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	208
BsnI	GGCC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	20
BstDEI	CTNAG	3 cut(s)	102, 196, 266
BstF5I	GGATG	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	2 cut(s)	91, 207
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	5 cut(s)	96, 124, 179, 202, 265
CviKI_1	RGCY	5 cut(s)	96, 124, 179, 202, 265
DdeI	CTNAG	3 cut(s)	102, 196, 266
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	157
FaiI	YATR	8 cut(s)	50, 52, 146, 155, 168, 170, 187, 189
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	208
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	260, 269, 275
Hpy188III	TCNNGA	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	20
HpyF3I	CTNAG	3 cut(s)	102, 196, 266
Hsp92II	CATG	1 cut(s)	157
LpnPI	CCDG	4 cut(s)	78, 105, 138, 221
Lsp1109I	GCAGC	1 cut(s)	133
MluCI	AATT	3 cut(s)	70, 182, 277
MnlI	CCTC	2 cut(s)	109, 239
MseI	TTAA	2 cut(s)	74, 98
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	2 cut(s)	93, 209
MvaI	CCWGG	1 cut(s)	93
NciI	CCSGG	1 cut(s)	209
NlaIII	CATG	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	74, 98
SatI	GCNGC	1 cut(s)	122
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	93, 209
SetI	ASST	2 cut(s)	108, 204
SfcI	CTRYAG	1 cut(s)	111
SgeI	CNNG	9 cut(s)	104, 105, 137, 152, 166, 220, 221, 241, 250
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	70, 182, 277
SspI	AATATT	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	91, 207
TaaI	ACNGT	1 cut(s)	20
TasI	AATT	3 cut(s)	70, 182, 277
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	74, 98
Tru9I	TTAA	2 cut(s)	74, 98
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.