pycom13g03460

Universal stress protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0004080
Physical Location & Seq
Forward (+)
2289011 .. 2290286
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 558 bp
ATGGGAGAGGCGATTCCAAGAGGAGAAGAAAGAATGGGAGAAGCGGTTGCAAAAGGAGCCGAGAAGAAGGTGATGGTGGCCATTGACGAGAGCGAGAGCAGTCATTACGCTCTCATGTGGGTTCTCGACAACCTCAAAGACTCCATAACCGACTCGCCCTTGACCATCTTCATGGCTCAGACTCCCTCCAACGGCAACATCACCTTCTCGGCGTCGCTCGGCGCTGCTCGCATGTACTATCCTACGTCTTCCAGTCAGGAGTTTGTTAACTGTTCCCAAGAAAGTCACAGGAAGTTTGCGTTGGCACTGTTGGAGAAAGCTAAGCAGATATGTGCTAGTCGTGGGGTAAATGCAGAGACAGTCACAGAAGTTGGAGATCCGAAAGCTGCCATATGTGATGCTGTCAAAAAACACGGCATCAAGCTGCTAATTGTAGGCGAGCGTGGGCTCGGAAAAATCCAAAGGGCAATTCTTGGTAGCGTCAGCGATTACTGTGTTCAGTACGCCAAGTGCCCTGTCCTTGTGGTGAAGAAATCAAAAGCTGAAGCTCTTGCTTGA

Protein Analysis

186

Amino Acids

19.88

Weight (kDa)

8.23

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 22 - 177 1.7e-26 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 2 cut(s) 236, 503
AfiI CCNNNNNNNGG 1 cut(s) 191
AjuI GAANNNNNNNTTGG 4 cut(s) 284, 316, 453, 485
AluBI AGCT 5 cut(s) 320, 386, 424, 542, 548
AluI AGCT 5 cut(s) 320, 386, 424, 542, 548
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 1 cut(s) 371
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 224, 386, 424
AspLEI GCGC 1 cut(s) 224
AsuHPI GGTGA 3 cut(s) 82, 193, 538
BaeGI GKGCMC 1 cut(s) 515
BalI TGGCCA 1 cut(s) 80
BanII GRGCYC 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 211, 373, 411
BccI CCATC 2 cut(s) 67, 173
BceAI ACGGC 2 cut(s) 208, 430
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 3 cut(s) 225, 387, 425
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 3 cut(s) 226, 388, 426
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 2 cut(s) 388, 426
BpiI GAAGAC 1 cut(s) 240
Bpu1102I GCTNAGC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 3 cut(s) 211, 373, 411
BshFI GGCC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 450, 515
Bsp143I GATC 1 cut(s) 376
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 371
BsrI ACTGG 1 cut(s) 252
BssMI GATC 1 cut(s) 376
BssNI GRCGYC 1 cut(s) 212
Bst4CI ACNGT 4 cut(s) 272, 309, 361, 494
BstACI GRCGYC 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 229, 440
BstDEI CTNAG 2 cut(s) 177, 321
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 2 cut(s) 56, 228
BstNSI RCATGY 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 515
BstV1I GCAGC 3 cut(s) 211, 373, 411
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 172
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 229, 440
CfoI GCGC 1 cut(s) 224
CseI GACGC 2 cut(s) 201, 469
Csp6I GTAC 2 cut(s) 235, 502
CviAII CATG 3 cut(s) 115, 172, 232
CviJI RGCY 9 cut(s) 59, 80, 176, 320, 386, 424, 448, 542, 548
CviKI_1 RGCY 9 cut(s) 59, 80, 176, 320, 386, 424, 448, 542, 548
CviQI GTAC 2 cut(s) 235, 502
DdeI CTNAG 2 cut(s) 177, 321
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 450
FaeI CATG 3 cut(s) 118, 175, 235
FaiI YATR 7 cut(s) 116, 146, 173, 233, 331, 392, 394
FatI CATG 3 cut(s) 114, 171, 231
FauNDI CATATG 1 cut(s) 392
Fnu4HI GCNGC 3 cut(s) 225, 387, 425
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 3 cut(s) 225, 387, 425
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 223
GluI GCNGC 3 cut(s) 225, 387, 425
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 80
HgaI GACGC 2 cut(s) 201, 469
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 3 cut(s) 118, 175, 235
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 4 cut(s) 13, 140, 152, 181
HpaI GTTAAC 1 cut(s) 268
HphI GGTGA 3 cut(s) 82, 193, 538
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 3 cut(s) 180, 381, 452
Hpy188III TCNNGA 2 cut(s) 125, 257
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 61, 214
HpyCH4III ACNGT 4 cut(s) 272, 309, 361, 494
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 50, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 228
HpyF3I CTNAG 2 cut(s) 177, 321
HpySE526I ACGT 1 cut(s) 245
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 3 cut(s) 118, 175, 235
HspAI GCGC 1 cut(s) 222
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 242, 265, 274, 528
Lsp1109I GCAGC 3 cut(s) 211, 373, 411
LweI GCATC 2 cut(s) 388, 426
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 284, 361
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 5 cut(s) 38, 76, 160, 240, 541
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 2 cut(s) 450, 515
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 2 cut(s) 429, 468
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 3 cut(s) 134, 146, 175
MmeI TCCRAC 3 cut(s) 213, 291, 352
MnlI CCTC 3 cut(s) 14, 143, 196
Mox20I TGGCCA 1 cut(s) 80
MscI TGGCCA 1 cut(s) 80
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 56, 228
NdeI CATATG 1 cut(s) 392
NdeII GATC 1 cut(s) 376
NlaIII CATG 3 cut(s) 118, 175, 235
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 3 cut(s) 85, 188, 198
NmuCI GTSAC 2 cut(s) 284, 361
NspI RCATGY 1 cut(s) 235
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 3 cut(s) 226, 388, 426
PleI GAGTC 3 cut(s) 134, 146, 175
PpsI GAGTC 3 cut(s) 134, 146, 175
PspN4I GGNNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 2 cut(s) 236, 503
RsaNI GTAC 2 cut(s) 235, 502
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 225, 387, 425
Sau3AI GATC 1 cut(s) 376
SchI GAGTC 3 cut(s) 134, 146, 175
SduI GDGCHC 2 cut(s) 450, 515
SetI ASST 9 cut(s) 72, 135, 206, 248, 322, 388, 426, 544, 550
SfaNI GCATC 2 cut(s) 388, 426
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 2 cut(s) 429, 468
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 336
TaaI ACNGT 4 cut(s) 272, 309, 361, 494
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 429, 468
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 2 cut(s) 284, 361
TseI GCWGC 3 cut(s) 224, 386, 424
Tsp45I GTSAC 2 cut(s) 284, 361
TspDTI ATGAA 1 cut(s) 160
TspRI CASTG 1 cut(s) 312
XceI RCATGY 1 cut(s) 235
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.