pycom13g05540

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0007435
Physical Location & Seq
Reverse (-)
3669006 .. 3671977
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1176 bp
ATGCTCCACGTGTATTCACGCCGACTCAATTCACGCTCGAAATGCCCAAAAACAGAGACAAAGAGGAGAGAAAGAAAGCGTGAGAGCACAGACAGCGATCGAGAGAGAGCCATGGATCCAAACCAGCAGAGACCAGGAATTCCACCAAATCGCCCTCAGCCACCACCTCAAGGCGGCGGCGACTCCTCGGCCATTCTCTTTGTCCTCTTCGCTTTCCTCGCCATTTTTTTCGCCGTGACGGTTCTTCCAACATCATCAACTATATCAATTCTGCACCAAGTCCCAGAAGGTCATGTTGGAGTATATTGGAGAGGAGGCGCTCTTCTGAAGACAATTACAGATCGATGTTTTCATCTCAAGCTGCCGCTGGTCACCCATTTTGAACCCGTTCAAGTGACCCTGCAGACTGATCAGGTCGTAAATCGGCTTCGTAAGGAATTTGTGTATGAGACGCTTCTCAATTATGGCGTGCAATATGACAATACATGGATATATGACAAAATTCATCATGAGATCGATCAGTTCTGCAGCTCACATTCTCTTCAAGAAGTGTATATTGATGTGTTCGATCAGATTGATGAACAGATGAAAGAAGCCCTTCAAGGTGACTGTACCCGCTATGCTCCAGGCATTGAAATCATCAATGTCCGTGTTACAAAGCCAACCATCCCGGAGAGTATAAGACGTAACTTTGAGCAAATGGAGGAGGAGCGCACCAAGGTCTTAATTGCTATAGAGAGACAGAGAGTAGTGGAGAAAGAGGCAGAAACCAAGAAGAAGATGGCTATCAGTGAGGCTGAGAAGAACGCCAATGTCAGTAAGATTCTCATGGAACAAAAGTTGACGGAGAAGGACAGTGCCAGGAGGCAGCAGGAGATTGAAAATCAGATGTACACAGCTCGGGAAATGAGCCTTGCGGATGCTGATTTCTATAAAGTCATGAAGGAAGCTGAAGCAAACAAGTTGAAGCTTACTCCGCAGTTTCTTGAGCTTAAATTCATCGACGCCATTGCTGATAATACTAAGATTTTCTTCGGAGACAAGGTTCCCAATATGATTCTGGATCAGAGGTTGCTGGGGAACTTCTTACAGGCTCCGACCGAGGTATCGAAAGAAGTGTCCGTGGAAGCTAACTCAGAAGCTGGTGAGGACAATCCAGGAGTCCAAACGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

392

Amino Acids

44.93

Weight (kDa)

6.01

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 148 - 254 4.5e-12 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 174, 177, 365, 616, 917, 977
AclWI GGATC 3 cut(s) 110, 123, 1071
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 4 cut(s) 138, 437, 501, 995
AcuI CTGAAG 2 cut(s) 347, 972
AcvI CACGTG 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 1005
AfaI GTAC 2 cut(s) 613, 893
AfiI CCNNNNNNNGG 2 cut(s) 170, 173
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 7 cut(s) 383, 392, 545, 602, 635, 881, 967
AjnI CCWGG 4 cut(s) 133, 625, 860, 1156
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AloI GAACNNNNNNTCC 2 cut(s) 1029, 1061
AluBI AGCT 8 cut(s) 361, 531, 899, 950, 970, 991, 1130, 1142
AluI AGCT 8 cut(s) 361, 531, 899, 950, 970, 991, 1130, 1142
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 5 cut(s) 50, 124, 443, 733, 1032
AlwI GGATC 3 cut(s) 110, 123, 1071
AlwNI CAGNNNCTG 1 cut(s) 1142
Ama87I CYCGRG 1 cut(s) 900
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 3 cut(s) 361, 528, 868
ApoI RAATTY 4 cut(s) 138, 437, 501, 995
ArsI GACNNNNNNTTYG 2 cut(s) 1103, 1135
Asp700I GAANNNNTTC 2 cut(s) 387, 597
AspLEI GCGC 2 cut(s) 320, 714
AsuC2I CCSGG 1 cut(s) 671
AsuHPI GGTGA 3 cut(s) 364, 617, 1157
AvaI CYCGRG 1 cut(s) 900
BaeI ACNNNNGTAYC 2 cut(s) 1089, 1122
BamHI GGATCC 1 cut(s) 115
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbrPI CACGTG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 89
BbvCI CCTCAGC 1 cut(s) 156
BbvI GCAGC 3 cut(s) 348, 540, 880
BccI CCATC 2 cut(s) 674, 775
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 4 cut(s) 135, 627, 862, 1158
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 671
BcoDI GTCTC 5 cut(s) 50, 124, 443, 733, 1032
BfmI CTRYAG 3 cut(s) 401, 526, 732
BfoI RGCGCY 1 cut(s) 321
BisI GCNGC 6 cut(s) 175, 178, 362, 365, 529, 869
BlsI GCNGC 6 cut(s) 176, 179, 363, 366, 530, 870
Bme1390I CCNGG 5 cut(s) 135, 627, 671, 862, 1158
BmeT110I CYCGRG 1 cut(s) 900
BmiI GGNNCC 3 cut(s) 117, 1047, 1095
BmrFI CCNGG 5 cut(s) 135, 627, 671, 862, 1158
BmsI GCATC 1 cut(s) 910
BpiI GAAGAC 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 609
Bpu10I CCTNAGC 1 cut(s) 156
BpuEI CTTGAG 3 cut(s) 153, 341, 1007
BpuMI CCSGG 1 cut(s) 671
Bsa29I ATCGAT 2 cut(s) 343, 516
BsaAI YACGTR 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 785
BsaHI GRCGYC 1 cut(s) 1005
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 5 cut(s) 111, 186, 717, 1101, 1122
BsaXI ACNNNNNCTCC 2 cut(s) 1029, 1059
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 173
Bse3DI GCAATG 1 cut(s) 1008
Bse8I GATNNNNATC 1 cut(s) 785
BseBI CCWGG 4 cut(s) 135, 627, 862, 1158
BseCI ATCGAT 2 cut(s) 343, 516
BseDI CCNNGG 5 cut(s) 111, 186, 717, 1101, 1122
BseGI GGATG 2 cut(s) 666, 925
BseJI GATNNNNATC 1 cut(s) 785
BseLI CCNNNNNNNGG 2 cut(s) 170, 173
BseMI GCAATG 1 cut(s) 1008
BseMII CTCAG 3 cut(s) 170, 789, 1149
BseRI GAGGAG 5 cut(s) 79, 175, 327, 719, 722
BseXI GCAGC 3 cut(s) 348, 540, 880
BseYI CCCAGC 1 cut(s) 1075
BsgI GTGCAG 1 cut(s) 257
Bsh1285I CGRYCG 2 cut(s) 100, 1101
BshFI GGCC 1 cut(s) 191
BshVI ATCGAT 2 cut(s) 343, 516
BsiEI CGRYCG 2 cut(s) 100, 1101
BsiHKAI GWGCWC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 900
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 170, 173
BsmAI GTCTC 5 cut(s) 50, 124, 443, 733, 1032
BsmBI CGTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 900
Bsp1286I GDGCHC 1 cut(s) 89
Bsp1407I TGTACA 1 cut(s) 891
Bsp143I GATC 8 cut(s) 97, 115, 340, 409, 513, 517, 568, 1063
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 6 cut(s) 174, 177, 365, 616, 917, 977
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 3 cut(s) 169, 790, 1148
BspDI ATCGAT 2 cut(s) 343, 516
BspHI TCATGA 2 cut(s) 508, 939
BspLI GGNNCC 3 cut(s) 117, 1047, 1095
BspMAI CTGCAG 2 cut(s) 405, 530
BspPI GGATC 3 cut(s) 110, 123, 1071
BspQI GCTCTTC 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 1008
BsrGI TGTACA 1 cut(s) 891
BssECI CCNNGG 5 cut(s) 111, 186, 717, 1101, 1122
BssMI GATC 8 cut(s) 97, 115, 340, 409, 513, 517, 568, 1063
BssNI GRCGYC 1 cut(s) 1005
BssT1I CCWWGG 2 cut(s) 111, 717
Bst2UI CCWGG 4 cut(s) 135, 627, 862, 1158
Bst4CI ACNGT 4 cut(s) 241, 611, 857, 1171
Bst6I CTCTTC 3 cut(s) 212, 327, 546
BstACI GRCGYC 1 cut(s) 1005
BstAUI TGTACA 1 cut(s) 891
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 4 cut(s) 156, 798, 1023, 1135
BstDSI CCRYGG 2 cut(s) 111, 1122
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 2 cut(s) 666, 925
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 2 cut(s) 320, 714
BstKTI GATC 8 cut(s) 100, 118, 343, 412, 516, 520, 571, 1066
BstMAI GTCTC 5 cut(s) 50, 124, 443, 733, 1032
BstMBI GATC 8 cut(s) 97, 115, 340, 409, 513, 517, 568, 1063
BstMCI CGRYCG 2 cut(s) 100, 1101
BstMWI GCNNNNNNNGC 4 cut(s) 42, 93, 218, 976
BstNI CCWGG 4 cut(s) 135, 627, 862, 1158
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 5 cut(s) 133, 625, 669, 860, 1156
BstSFI CTRYAG 3 cut(s) 401, 526, 732
BstV1I GCAGC 3 cut(s) 348, 540, 880
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
Bsu15I ATCGAT 2 cut(s) 343, 516
BsuRI GGCC 1 cut(s) 191
BsuTUI ATCGAT 2 cut(s) 343, 516
BtgI CCRYGG 2 cut(s) 111, 1122
BtsCI GGATG 2 cut(s) 666, 925
BtsIMutI CAGTG 2 cut(s) 796, 862
Cac8I GCNNGC 1 cut(s) 470
CaiI CAGNNNCTG 1 cut(s) 1142
CciI TCATGA 2 cut(s) 508, 939
CfoI GCGC 2 cut(s) 320, 714
ClaI ATCGAT 2 cut(s) 343, 516
CseI GACGC 2 cut(s) 460, 1013
Csp6I GTAC 2 cut(s) 612, 892
CviAII CATG 6 cut(s) 112, 293, 486, 509, 829, 940
CviQI GTAC 2 cut(s) 612, 892
DdeI CTNAG 4 cut(s) 156, 798, 1023, 1135
DpnI GATC 8 cut(s) 99, 117, 342, 411, 515, 519, 570, 1065
DpnII GATC 8 cut(s) 97, 115, 340, 409, 513, 517, 568, 1063
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 3 cut(s) 212, 327, 546
EarI CTCTTC 3 cut(s) 212, 327, 546
Eco130I CCWWGG 2 cut(s) 111, 717
Eco31I GGTCTC 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 347, 972
Eco72I CACGTG 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 900
Eco91I GGTNACC 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 4 cut(s) 133, 625, 860, 1156
EcoT14I CCWWGG 2 cut(s) 111, 717
ErhI CCWWGG 2 cut(s) 111, 717
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 6 cut(s) 115, 296, 489, 512, 832, 943
FalI AAGNNNNNCTT 4 cut(s) 582, 614, 1016, 1048
FaqI GGGAC 1 cut(s) 266
FatI CATG 6 cut(s) 111, 292, 485, 508, 828, 939
FauI CCCGC 1 cut(s) 623
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 6 cut(s) 175, 178, 362, 365, 529, 869
FokI GGATG 2 cut(s) 653, 932
Fsp4HI GCNGC 6 cut(s) 175, 178, 362, 365, 529, 869
GlaI GCGC 2 cut(s) 319, 713
GluI GCNGC 6 cut(s) 175, 178, 362, 365, 529, 869
GsaI CCCAGC 1 cut(s) 1079
GsuI CTGGAG 1 cut(s) 609
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 1 cut(s) 191
HapII CCGG 1 cut(s) 671
HgaI GACGC 2 cut(s) 460, 1013
HhaI GCGC 2 cut(s) 320, 714
Hin1I GRCGYC 1 cut(s) 1005
Hin1II CATG 6 cut(s) 115, 296, 489, 512, 832, 943
Hin6I GCGC 2 cut(s) 318, 712
HinP1I GCGC 2 cut(s) 318, 712
HincII GTYRAC 1 cut(s) 843
HindII GTYRAC 1 cut(s) 843
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 5 cut(s) 24, 182, 823, 1057, 1161
HpaII CCGG 1 cut(s) 671
HphI GGTGA 3 cut(s) 364, 617, 1157
Hpy166II GTNNAC 2 cut(s) 843, 894
Hpy188I TCNGA 8 cut(s) 327, 573, 888, 1037, 1068, 1098, 1138, 1175
Hpy188III TCNNGA 7 cut(s) 101, 509, 545, 902, 940, 986, 1061
Hpy8I GTNNAC 2 cut(s) 843, 894
Hpy99I CGWCG 1 cut(s) 1007
HpyAV CCTTC 4 cut(s) 281, 608, 844, 937
HpyCH4III ACNGT 4 cut(s) 241, 611, 857, 1171
HpyCH4IV ACGT 2 cut(s) 9, 685
HpyCH4V TGCA 4 cut(s) 274, 403, 472, 528
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 93, 218, 976
HpyF3I CTNAG 4 cut(s) 156, 798, 1023, 1135
HpySE526I ACGT 2 cut(s) 9, 685
Hsp92I GRCGYC 1 cut(s) 1005
Hsp92II CATG 6 cut(s) 115, 296, 489, 512, 832, 943
HspAI GCGC 2 cut(s) 318, 712
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 8 cut(s) 97, 115, 340, 409, 513, 517, 568, 1063
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 4 cut(s) 9, 628, 709, 1099
Lsp1109I GCAGC 3 cut(s) 348, 540, 880
LweI GCATC 1 cut(s) 910
MaeII ACGT 2 cut(s) 9, 685
MaeIII GTNAC 6 cut(s) 235, 370, 394, 605, 652, 686
MalI GATC 8 cut(s) 99, 117, 342, 411, 515, 519, 570, 1065
MboI GATC 8 cut(s) 97, 115, 340, 409, 513, 517, 568, 1063
MboII GAAGA 9 cut(s) 199, 236, 314, 340, 533, 787, 790, 814, 1024
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 9 cut(s) 28, 138, 267, 333, 437, 460, 501, 726, 995
MlyI GAGTC 3 cut(s) 18, 176, 1170
MmeI TCCRAC 3 cut(s) 272, 277, 1121
MroXI GAANNNNTTC 2 cut(s) 387, 597
MseI TTAA 2 cut(s) 725, 993
MspA1I CMGCKG 1 cut(s) 367
MspI CCGG 1 cut(s) 671
MspR9I CCNGG 5 cut(s) 135, 627, 671, 862, 1158
MvaI CCWGG 4 cut(s) 135, 627, 862, 1158
MwoI GCNNNNNNNGC 4 cut(s) 42, 93, 218, 976
NciI CCSGG 1 cut(s) 671
NcoI CCATGG 1 cut(s) 111
NdeII GATC 8 cut(s) 97, 115, 340, 409, 513, 517, 568, 1063
NlaIII CATG 6 cut(s) 115, 296, 489, 512, 832, 943
NlaIV GGNNCC 3 cut(s) 117, 1047, 1095
NmeAIII GCCGAG 1 cut(s) 167
NmuCI GTSAC 4 cut(s) 235, 370, 394, 605
PagI TCATGA 2 cut(s) 508, 939
PciSI GCTCTTC 1 cut(s) 327
PdmI GAANNNNTTC 2 cut(s) 387, 597
PfeI GAWTC 2 cut(s) 823, 1057
PfoI TCCNGGA 2 cut(s) 669, 1156
PkrI GCNGC 6 cut(s) 176, 179, 363, 366, 530, 870
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 3 cut(s) 18, 176, 1169
PmaCI CACGTG 1 cut(s) 10
PmlI CACGTG 1 cut(s) 10
PpsI GAGTC 3 cut(s) 18, 176, 1169
Ppu21I YACGTR 1 cut(s) 10
Psp6I CCWGG 4 cut(s) 133, 625, 860, 1156
PspCI CACGTG 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 1075
PspGI CCWGG 4 cut(s) 133, 625, 860, 1156
PspN4I GGNNCC 3 cut(s) 117, 1047, 1095
PstI CTGCAG 2 cut(s) 405, 530
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 1 cut(s) 115
PvuI CGATCG 1 cut(s) 100
RsaI GTAC 2 cut(s) 613, 893
RsaNI GTAC 2 cut(s) 612, 892
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 725, 993
SatI GCNGC 6 cut(s) 175, 178, 362, 365, 529, 869
Sau3AI GATC 8 cut(s) 97, 115, 340, 409, 513, 517, 568, 1063
SchI GAGTC 3 cut(s) 18, 176, 1170
ScrFI CCNGG 5 cut(s) 135, 627, 671, 862, 1158
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 1 cut(s) 910
SfcI CTRYAG 3 cut(s) 401, 526, 732
SmlI CTYRAG 3 cut(s) 168, 356, 986
SmoI CTYRAG 3 cut(s) 168, 356, 986
Sse9I AATT 9 cut(s) 28, 138, 267, 333, 437, 460, 501, 726, 995
SsiI CCGC 6 cut(s) 174, 177, 365, 616, 917, 977
StyD4I CCNGG 5 cut(s) 133, 625, 669, 860, 1156
StyI CCWWGG 2 cut(s) 111, 717
TaaI ACNGT 4 cut(s) 241, 611, 857, 1171
TaiI ACGT 2 cut(s) 12, 688
TaqI TCGA 7 cut(s) 38, 100, 343, 516, 567, 1002, 1109
TaqII GACCGA 1 cut(s) 1115
TasI AATT 9 cut(s) 28, 138, 267, 333, 437, 460, 501, 726, 995
TatI WGTACW 1 cut(s) 891
TauI GCSGC 3 cut(s) 177, 180, 367
TfiI GAWTC 2 cut(s) 823, 1057
Tru1I TTAA 2 cut(s) 725, 993
Tru9I TTAA 2 cut(s) 725, 993
TscAI CASTG 2 cut(s) 796, 862
TseFI GTSAC 4 cut(s) 235, 370, 394, 605
TseI GCWGC 3 cut(s) 361, 528, 868
Tsp45I GTSAC 4 cut(s) 235, 370, 394, 605
TspDTI ATGAA 6 cut(s) 341, 494, 594, 602, 956, 988
TspGWI ACGGA 3 cut(s) 638, 860, 1111
TspRI CASTG 2 cut(s) 796, 862
XapI RAATTY 4 cut(s) 138, 437, 501, 995
XcmI CCANNNNNNNNNTGG 2 cut(s) 778, 1057
XmnI GAANNNNTTC 2 cut(s) 387, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.