pycom13g16600

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0003635
Physical Location & Seq
Forward (+)
12390036 .. 12390718
683 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGAGAACCATGGCCACTAGTAAAGCTGAAGATCAGAAGGAATATGTAAATGAACAAGCAGTTGCAAATAAGTTTGCTGCTATGAGGTCTGAACTCAACCAAATTTACTCGAAAATCACTGAGCTAGAGATGGAAGCGAGCGAGCACTTGTTGGTCATCAATGCCATCCAGCCACTCGATCCATCCAGGCGATGCTACCGGATGATCGGAGGTGTTCTGGTGGAGAGAACCATCAAGGAGGTTCTGCCTGCTGTGCAGCGCAACAAAGAGGGGATTGAGGAGGTTATAGCTAGGCTGAATGAGGCATTGGAAAAGAAGAAAAAGGAAATCTCTGATTTTGAGGCTAAGTACAAGATCAGGATACGGAAGGAGCAGGGTGAGGAGAAGGATGATAGCGCTCGGAAAGAAGGGACTGCTCAAGGAGTCCTGGTCGGCCCTGCTGGCGGAAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

152

Amino Acids

17.04

Weight (kDa)

6.05

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 19 - 123 3.3e-26 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 444
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 350
AfeI AGCGCT 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 443
AhlI ACTAGT 1 cut(s) 17
AjnI CCWGG 2 cut(s) 185, 426
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 3 cut(s) 26, 124, 290
AluI AGCT 3 cut(s) 26, 124, 290
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 1 cut(s) 173
Aor51HI AGCGCT 1 cut(s) 397
AoxI GGCC 2 cut(s) 12, 433
ApeKI GCWGC 2 cut(s) 77, 256
ApoI RAATTY 1 cut(s) 102
AspLEI GCGC 2 cut(s) 261, 398
AspS9I GGNCC 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 389
BalI TGGCCA 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 64, 268
BccI CCATC 4 cut(s) 124, 173, 190, 239
BciT130I CCWGG 2 cut(s) 187, 428
BciVI GTATCC 1 cut(s) 354
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 3 cut(s) 18, 125, 291
BfoI RGCGCY 1 cut(s) 399
BfuI GTATCC 1 cut(s) 354
BglI GCCNNNNNGGC 1 cut(s) 441
BisI GCNGC 2 cut(s) 78, 257
BlsI GCNGC 2 cut(s) 79, 258
Bme1390I CCNGG 2 cut(s) 187, 428
BmgT120I GGNCC 1 cut(s) 434
BmrFI CCNGG 2 cut(s) 187, 428
BmsI GCATC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 443
BseBI CCWGG 2 cut(s) 187, 428
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 4 cut(s) 165, 182, 207, 394
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 111
BseRI GAGGAG 2 cut(s) 293, 395
BseXI GCAGC 2 cut(s) 64, 268
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 2 cut(s) 14, 435
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 199
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 2 cut(s) 14, 435
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 4 cut(s) 31, 178, 204, 354
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 1 cut(s) 444
BspANI GGCC 2 cut(s) 14, 435
BspCNI CTCAG 1 cut(s) 112
BspPI GGATC 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 4 cut(s) 31, 178, 204, 354
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 187, 428
BstC8I GCNNGC 4 cut(s) 139, 143, 249, 442
BstDEI CTNAG 2 cut(s) 120, 345
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 4 cut(s) 165, 182, 207, 394
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 2 cut(s) 261, 398
BstKTI GATC 4 cut(s) 34, 181, 207, 357
BstMBI GATC 4 cut(s) 31, 178, 204, 354
BstMWI GCNNNNNNNGC 2 cut(s) 253, 441
BstNI CCWGG 2 cut(s) 187, 428
BstSCI CCNGG 2 cut(s) 185, 426
BstV1I GCAGC 2 cut(s) 64, 268
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 2 cut(s) 14, 435
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 4 cut(s) 165, 182, 207, 394
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 4 cut(s) 139, 143, 249, 442
CfoI GCGC 2 cut(s) 261, 398
Cfr13I GGNCC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 10
CviJI RGCY 8 cut(s) 14, 26, 124, 172, 290, 295, 344, 435
CviKI_1 RGCY 8 cut(s) 14, 26, 124, 172, 290, 295, 344, 435
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 120, 345
DpnI GATC 4 cut(s) 33, 180, 206, 356
DpnII GATC 4 cut(s) 31, 178, 204, 354
EaeI YGGCCR 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 9
Eco47III AGCGCT 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 185, 426
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 13
FaiI YATR 4 cut(s) 11, 45, 83, 287
FaqI GGGAC 1 cut(s) 424
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 78, 257
FokI GGATG 4 cut(s) 152, 169, 214, 401
Fsp4HI GCNGC 2 cut(s) 78, 257
FspBI CTAG 3 cut(s) 18, 125, 291
GlaI GCGC 2 cut(s) 260, 397
GluI GCNGC 2 cut(s) 78, 257
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 2 cut(s) 14, 435
HapII CCGG 1 cut(s) 199
HhaI GCGC 2 cut(s) 261, 398
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 2 cut(s) 259, 396
HinP1I GCGC 2 cut(s) 259, 396
HinfI GANTC 1 cut(s) 423
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 389
Hpy188I TCNGA 5 cut(s) 36, 91, 209, 334, 402
Hpy188III TCNNGA 1 cut(s) 358
HpyAV CCTTC 4 cut(s) 31, 361, 379, 401
HpyCH4V TGCA 2 cut(s) 65, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 441
HpyF3I CTNAG 2 cut(s) 120, 345
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 2 cut(s) 259, 396
Kzo9I GATC 4 cut(s) 31, 178, 204, 354
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 2 cut(s) 64, 268
LweI GCATC 1 cut(s) 182
MaeI CTAG 3 cut(s) 18, 125, 291
MalI GATC 4 cut(s) 33, 180, 206, 356
MboI GATC 4 cut(s) 31, 178, 204, 354
MboII GAAGA 2 cut(s) 41, 328
MhlI GDGCHC 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 1 cut(s) 102
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 1 cut(s) 432
MnlI CCTC 9 cut(s) 78, 203, 232, 262, 271, 274, 295, 334, 373
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 14
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 2 cut(s) 187, 428
MvaI CCWGG 2 cut(s) 187, 428
MwoI GCNNNNNNNGC 2 cut(s) 253, 441
NcoI CCATGG 1 cut(s) 9
NdeII GATC 4 cut(s) 31, 178, 204, 354
NlaIII CATG 1 cut(s) 13
PkrI GCNGC 2 cut(s) 79, 258
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 185, 426
PspGI CCWGG 2 cut(s) 185, 426
PspPI GGNCC 1 cut(s) 434
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SatI GCNGC 2 cut(s) 78, 257
Sau3AI GATC 4 cut(s) 31, 178, 204, 354
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 2 cut(s) 187, 428
SduI GDGCHC 1 cut(s) 147
SetI ASST 7 cut(s) 28, 89, 126, 214, 243, 285, 292
SfaNI GCATC 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 444
SspMI CTAG 3 cut(s) 18, 125, 291
StyD4I CCNGG 2 cut(s) 185, 426
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 2 cut(s) 110, 177
TasI AATT 1 cut(s) 102
TatI WGTACW 1 cut(s) 348
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 77, 256
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 102
XspI CTAG 3 cut(s) 18, 125, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.