Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

15846197 .. 15851382

Gene Structure 5186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAACTTTTGGATGAAGGTGGGCTACTGGTCTATGCCCTTGAAATGGCATTTTTTGGAAATTGTGGCATTAATTTGGACTTGACTTCACATGGGAAGAGCCTATTCCAAACTCTTTTTGCTAAAGAACTTGGTTTGGTTATTGAGGTAAGCTGGAATAACTTAGATTTGGTGTTGGAAAAACTGCGCAGTAACAGTATTTTAGCTGAGATTATTGGTCAAGTTAATGCCACACCCTCAGTAGAGTTAAAGGTGATATGGGTTTATTCTGGAATCTTGGTTGAGAATGATGATAGAACTTGGAAATTAGGAAAAATTTCATCTGTGGTTCAATCTGCAACAAAAGTCCTTAGACAAGTCATACGGTCGGAACAGAAAGAAAGTATTTCTTCGGTTCTTACCGAAGACGGTGTTGACGGGATTCATGGCGACCTGGTTCTTGGCCGCATCGCCGATCAGCCTCTCCGTGTCAGTAAACGCGACATAAGACGGCGTCGTCCAGTTGCCCTGATCTTTGGCGATGATCTTGACACGATCGTGTTGCCAAATACGGACGCACGAGTAAGTCGTTCTGAGATCGATCCCGATCGCTGGCCCCTCTCCCTTTCCGCCATTGCAACCGCAGGGATTCAACCAATCAAACAAGCAAAGAACCGCAGAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

223

Amino Acids

24.64

Weight (kDa)

6.76

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	6 - 85	7.3e-07	AIR synthase related protein, C-terminal domain
NAD-GH	PF10712	134 - 197	1.1e-08	NAD-specific glutamate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	495
Acc16I	TGCGCA	1 cut(s)	188
AccII	CGCG	1 cut(s)	480
AciI	CCGC	4 cut(s)	445, 609, 621, 655
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	493
AfiI	CCNNNNNNNGG	2 cut(s)	46, 591
AgsI	TTSAA	3 cut(s)	44, 332, 632
AjnI	CCWGG	1 cut(s)	432
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	2 cut(s)	153, 206
AluI	AGCT	2 cut(s)	153, 206
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	2 cut(s)	442, 593
ApoI	RAATTY	1 cut(s)	315
AseI	ATTAAT	1 cut(s)	72
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BauI	CACGAG	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	411
BceAI	ACGGC	1 cut(s)	506
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BciT130I	CCWGG	1 cut(s)	434
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	596
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	579
BsaBI	GATNNNNATC	1 cut(s)	585
BsaHI	GRCGYC	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 591
Bse1I	ACTGG	2 cut(s)	33, 500
Bse3DI	GCAATG	1 cut(s)	612
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	434
BseCI	ATCGAT	1 cut(s)	579
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	46, 591
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	3 cut(s)	198, 252, 564
BseNI	ACTGG	2 cut(s)	33, 500
Bsh1236I	CGCG	1 cut(s)	480
Bsh1285I	CGRYCG	3 cut(s)	368, 537, 589
BshFI	GGCC	2 cut(s)	444, 595
BshVI	ATCGAT	1 cut(s)	579
BsiEI	CGRYCG	3 cut(s)	368, 537, 589
BslI	CCNNNNNNNGG	2 cut(s)	46, 591
BsnI	GGCC	2 cut(s)	444, 595
Bsp143I	GATC	7 cut(s)	454, 510, 523, 534, 576, 580, 586
BspACI	CCGC	4 cut(s)	445, 609, 621, 655
BspANI	GGCC	2 cut(s)	444, 595
BspCNI	CTCAG	3 cut(s)	199, 251, 565
BspDI	ATCGAT	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	596
BspPI	GGATC	1 cut(s)	575
BspQI	GCTCTTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	33, 500
BssMI	GATC	7 cut(s)	454, 510, 523, 534, 576, 580, 586
BssNI	GRCGYC	1 cut(s)	493
BssSI	CACGAG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	3 cut(s)	197, 366, 410
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	5 cut(s)	163, 207, 238, 350, 573
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	7 cut(s)	457, 513, 526, 537, 579, 583, 589
BstMBI	GATC	7 cut(s)	454, 510, 523, 534, 576, 580, 586
BstMCI	CGRYCG	3 cut(s)	368, 537, 589
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	480
BstV2I	GAAGAC	1 cut(s)	411
Bsu15I	ATCGAT	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	444, 595
BsuTUI	ATCGAT	1 cut(s)	579
BtgZI	GCGATG	2 cut(s)	433, 534
BtsCI	GGATG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	593
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	594
ClaI	ATCGAT	1 cut(s)	579
CseI	GACGC	2 cut(s)	482, 563
CsiI	ACCWGGT	1 cut(s)	432
CviAII	CATG	2 cut(s)	92, 425
CviJI	RGCY	7 cut(s)	25, 102, 153, 206, 444, 460, 595
CviKI_1	RGCY	7 cut(s)	25, 102, 153, 206, 444, 460, 595
DdeI	CTNAG	5 cut(s)	163, 207, 238, 350, 573
DpnI	GATC	7 cut(s)	456, 512, 525, 536, 578, 582, 588
DpnII	GATC	7 cut(s)	454, 510, 523, 534, 576, 580, 586
DrdI	GACNNNNNNGTC	1 cut(s)	495
DseDI	GACNNNNNNGTC	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	432
FaeI	CATG	2 cut(s)	95, 428
FaiI	YATR	6 cut(s)	36, 93, 259, 362, 426, 485
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FatI	CATG	2 cut(s)	91, 424
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	445
FspI	TGCGCA	1 cut(s)	188
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	445
HaeIII	GGCC	2 cut(s)	444, 595
HgaI	GACGC	2 cut(s)	482, 563
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	493
Hin1II	CATG	2 cut(s)	95, 428
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	3 cut(s)	273, 421, 628
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	415, 476
Hpy188I	TCNGA	2 cut(s)	370, 574
Hpy188III	TCNNGA	3 cut(s)	270, 527, 584
Hpy8I	GTNNAC	2 cut(s)	415, 476
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	3 cut(s)	197, 366, 410
HpyCH4V	TGCA	2 cut(s)	338, 617
HpyF3I	CTNAG	5 cut(s)	163, 207, 238, 350, 573
Hsp92I	GRCGYC	1 cut(s)	493
Hsp92II	CATG	2 cut(s)	95, 428
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	7 cut(s)	454, 510, 523, 534, 576, 580, 586
LguI	GCTCTTC	1 cut(s)	92
LpnPI	CCDG	9 cut(s)	14, 139, 255, 419, 446, 513, 521, 577, 609
LweI	GCATC	1 cut(s)	456
MabI	ACCWGGT	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	7 cut(s)	456, 512, 525, 536, 578, 582, 588
MboI	GATC	7 cut(s)	454, 510, 523, 534, 576, 580, 586
MboII	GAAGA	3 cut(s)	109, 381, 416
MluCI	AATT	4 cut(s)	61, 73, 305, 315
MmeI	TCCRAC	2 cut(s)	156, 348
MnlI	CCTC	4 cut(s)	139, 247, 471, 608
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	3 cut(s)	72, 225, 248
MslI	CAYNNNNRTG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	1 cut(s)	480
NdeII	GATC	7 cut(s)	454, 510, 523, 534, 576, 580, 586
NlaIII	CATG	2 cut(s)	95, 428
NlaIV	GGNNCC	1 cut(s)	596
NsbI	TGCGCA	1 cut(s)	188
OliI	CACNNNNGTG	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	273, 421, 628
PflFI	GACNNNGTC	1 cut(s)	492
PkrI	GCNGC	1 cut(s)	446
Ple19I	CGATCG	2 cut(s)	537, 589
PshBI	ATTAAT	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	596
PspPI	GGNCC	1 cut(s)	594
PsyI	GACNNNGTC	1 cut(s)	492
PvuI	CGATCG	2 cut(s)	537, 589
RseI	CAYNNNNRTG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	72, 225, 248
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	7 cut(s)	454, 510, 523, 534, 576, 580, 586
Sau96I	GGNCC	1 cut(s)	594
ScrFI	CCNGG	1 cut(s)	434
SetI	ASST	6 cut(s)	22, 150, 155, 208, 255, 435
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	4 cut(s)	61, 73, 305, 315
SsiI	CCGC	4 cut(s)	445, 609, 621, 655
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	197, 366, 410
TaqI	TCGA	1 cut(s)	579
TasI	AATT	4 cut(s)	61, 73, 305, 315
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	3 cut(s)	273, 421, 628
Tru1I	TTAA	3 cut(s)	72, 225, 248
Tru9I	TTAA	3 cut(s)	72, 225, 248
TspDTI	ATGAA	4 cut(s)	17, 30, 309, 413
TspGWI	ACGGA	2 cut(s)	455, 566
Tth111I	GACNNNGTC	1 cut(s)	492
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.