Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000278.1

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Reverse (-)

100861 .. 102041

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000278.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ctgccacaaatcataagcgccagaccactgcctgcaatagatcgccgccggcatcggaactccacagtctaccttagatcgcccctgcctgcatcgatctcccacctgacgcccatcacaacttcaaccccttcgtcgagcttctccaccgatctcttcgaccgtcgcgccttctcctatcatccccccagtgactgcgtccttgtctcaggatctaccaaaacccacccaaccccaaagcaccaaaatgattttgataagcaagaggaggtgttgaggcaatttgatttgaacacggcgtatgggccatgttttgggatcaccagatttgcacggaaagcagagattaggtggctttgctctttcttgattgtgaacaattgccctgaccttgaggatgttccgtatctgaagcgagtgtttgagggagttcagtgccttcttgatgatgaactggtctctggtggccatgatattagtgatggtggaattctggtctatgccgttgagatggcatttgctgggaattgtggcattaatttggatgaaagtaccttctttcataagggacatataggaggaagtggcagtgagggggctgttgtagtagcctttggctgcaacgtgggtagtgatggtggtggcagtggcgaggatggggttgaagtgcggcggcgatggggacgggagaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

232

Amino Acids

25.46

Weight (kDa)

6.25

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	46, 670, 673
AclWI	GGATC	2 cut(s)	220, 326
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	126, 292, 665
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	211, 463
AlwI	GGATC	2 cut(s)	220, 326
AlwNI	CAGNNNCTG	1 cut(s)	195
AoxI	GGCC	2 cut(s)	305, 466
ApeKI	GCWGC	1 cut(s)	618
ApoI	RAATTY	1 cut(s)	489
AseI	ATTAAT	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	20, 170
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	6 cut(s)	122, 476, 505, 629, 650, 672
BceAI	ACGGC	2 cut(s)	312, 488
BcoDI	GTCTC	2 cut(s)	211, 463
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	4 cut(s)	46, 619, 671, 674
BlsI	GCNGC	4 cut(s)	47, 620, 672, 675
BmgT120I	GGNCC	1 cut(s)	305
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	61, 101
BmuI	ACTGGG	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	189, 459
BseCI	ATCGAT	1 cut(s)	95
BseGI	GGATG	4 cut(s)	181, 403, 550, 661
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	189, 459
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	605
BseYI	CCCAGC	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	307, 468
BshVI	ATCGAT	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	211, 463
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	307, 468
Bso31I	GGTCTC	1 cut(s)	463
Bsp143I	GATC	6 cut(s)	40, 77, 96, 151, 212, 318
BspACI	CCGC	3 cut(s)	46, 670, 673
BspANI	GGCC	2 cut(s)	307, 468
BspCNI	CTCAG	1 cut(s)	221
BspDI	ATCGAT	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	2 cut(s)	220, 326
BspTNI	GGTCTC	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	189, 459
BssAI	RCCGGY	1 cut(s)	48
BssMI	GATC	6 cut(s)	40, 77, 96, 151, 212, 318
BssNI	GRCGYC	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	67, 164
Bst6I	CTCTTC	2 cut(s)	161, 686
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	33, 50, 90
BstDEI	CTNAG	2 cut(s)	74, 208
BstF5I	GGATG	4 cut(s)	181, 403, 550, 661
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 170
BstKTI	GATC	6 cut(s)	43, 80, 99, 154, 215, 321
BstMAI	GTCTC	2 cut(s)	211, 463
BstMBI	GATC	6 cut(s)	40, 77, 96, 151, 212, 318
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	307, 468
BsuTUI	ATCGAT	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	691
BtsCI	GGATG	4 cut(s)	181, 403, 550, 661
BtsI	GCAGTG	3 cut(s)	26, 595, 652
BtsIMutI	CAGTG	5 cut(s)	26, 196, 440, 595, 652
Cac8I	GCNNGC	3 cut(s)	33, 50, 90
CaiI	CAGNNNCTG	1 cut(s)	195
CfoI	GCGC	2 cut(s)	20, 170
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	95
CseI	GACGC	2 cut(s)	118, 187
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	2 cut(s)	309, 470
CviJI	RGCY	7 cut(s)	141, 307, 355, 468, 599, 611, 618
CviKI_1	RGCY	7 cut(s)	141, 307, 355, 468, 599, 611, 618
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	2 cut(s)	74, 208
DpnI	GATC	6 cut(s)	42, 79, 98, 153, 214, 320
DpnII	GATC	6 cut(s)	40, 77, 96, 151, 212, 318
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	2 cut(s)	161, 686
EarI	CTCTTC	2 cut(s)	161, 686
Eco31I	GGTCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	489
FaeI	CATG	2 cut(s)	312, 473
FaiI	YATR	8 cut(s)	14, 303, 310, 471, 501, 564, 573, 575
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	2 cut(s)	308, 469
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	46, 619, 671, 674
FokI	GGATG	4 cut(s)	168, 410, 557, 668
Fsp4HI	GCNGC	4 cut(s)	46, 619, 671, 674
GlaI	GCGC	2 cut(s)	19, 169
GluI	GCNGC	4 cut(s)	46, 619, 671, 674
GsaI	CCCAGC	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	307, 468
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	2 cut(s)	118, 187
HhaI	GCGC	2 cut(s)	20, 170
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	312, 473
Hin6I	GCGC	2 cut(s)	18, 168
HinP1I	GCGC	2 cut(s)	18, 168
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	70, 376
Hpy188I	TCNGA	2 cut(s)	57, 411
Hpy188III	TCNNGA	3 cut(s)	210, 367, 443
Hpy8I	GTNNAC	2 cut(s)	70, 376
Hpy99I	CGWCG	2 cut(s)	139, 168
HpyAV	CCTTC	4 cut(s)	141, 181, 449, 565
HpyCH4III	ACNGT	2 cut(s)	67, 164
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	4 cut(s)	35, 92, 332, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	74, 208
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	312, 473
HspAI	GCGC	2 cut(s)	18, 168
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Kzo9I	GATC	6 cut(s)	40, 77, 96, 151, 212, 318
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	2 cut(s)	61, 101
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	6 cut(s)	42, 79, 98, 153, 214, 320
MboI	GATC	6 cut(s)	40, 77, 96, 151, 212, 318
MboII	GAAGA	1 cut(s)	148
MfeI	CAATTG	1 cut(s)	379
MflI	RGATCY	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	5 cut(s)	281, 379, 489, 526, 538
MluNI	TGGCCA	1 cut(s)	468
MnlI	CCTC	8 cut(s)	259, 262, 270, 388, 418, 572, 586, 646
Mox20I	TGGCCA	1 cut(s)	468
MroNI	GCCGGC	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	1 cut(s)	49
MunI	CAATTG	1 cut(s)	379
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	338
NaeI	GCCGGC	1 cut(s)	50
NdeII	GATC	6 cut(s)	40, 77, 96, 151, 212, 318
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	312, 473
NmuCI	GTSAC	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	47, 620, 672, 675
PshBI	ATTAAT	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	521
PspPI	GGNCC	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	212
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	4 cut(s)	46, 619, 671, 674
Sau3AI	GATC	6 cut(s)	40, 77, 96, 151, 212, 318
Sau96I	GGNCC	1 cut(s)	305
SetI	ASST	8 cut(s)	75, 108, 143, 273, 353, 393, 557, 627
SfaNI	GCATC	2 cut(s)	61, 101
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	5 cut(s)	281, 379, 489, 526, 538
SsiI	CCGC	3 cut(s)	46, 670, 673
TaaI	ACNGT	2 cut(s)	67, 164
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	95, 137, 159
TasI	AATT	5 cut(s)	281, 379, 489, 526, 538
TauI	GCSGC	3 cut(s)	48, 673, 676
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	5 cut(s)	33, 196, 440, 595, 652
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	618
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	465, 551, 561
TspGWI	ACGGA	2 cut(s)	349, 393
TspRI	CASTG	5 cut(s)	33, 196, 440, 595, 652
Tth111I	GACNNNGTC	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	1 cut(s)	489
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.