Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

4231190 .. 4231819

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGCAGTGTTTTGGGATCACCAGATTCTCATGGTGGGAGCGTGCCTGCAAGCTGGGGATGGATCCATATCGATCTTCTTGATGAAAATCCCAAATCATCCCAAATTGAGACCCATATCGATCTATCGGGCCCCTGCAAATTCCTCTTTCTAATGTTGGAGAAAGTAGCGATTAGGTGGCTTTGCTCTTTCTTGATTGTGAACAATTGCCCTAATCTTGAGGATGTTCCGTATTTGAAGCGAGTGTTTAAGGGAGTTCAGGGCCTTCTGGATGATAAACTGGTCTCTGGTGGCCATGATATTAGTGATGGTGGACTTCTGGTCTATGCCGATGAGATGGCATTTGCTAGGAATTGTGGCATTAATTTGGACGAAAGTACCTTCTTTCATAAGCGACATATGGGAGGAAGTGTTGGTGGTAGTGGCGGTGAGGGGGGTGTTGCAGCAGCCTTTGGCTGCAACGTGGGTAGTGATGGTGGTGGCAGTGGCGAGGATGGGGTTGAAGTGCTACGGCGATGGGGAGGGGAGAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

179

Amino Acids

18.88

Weight (kDa)

5.13

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	72 - 130	8.2e-09	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	3 cut(s)	25, 58, 71
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	238, 503
AhdI	GACNNNNNGTC	1 cut(s)	320
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	104, 289
AlwI	GGATC	3 cut(s)	25, 58, 71
AoxI	GGCC	3 cut(s)	130, 262, 292
ApaI	GGGCCC	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	443, 446, 456
ApoI	RAATTY	1 cut(s)	140
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	3 cut(s)	130, 131, 262
AsuHPI	GGTGA	2 cut(s)	12, 440
BaeGI	GKGCMC	1 cut(s)	134
BaeI	ACNNNNGTAYC	2 cut(s)	361, 394
BalI	TGGCCA	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	443, 455, 458
BccI	CCATC	6 cut(s)	54, 302, 331, 467, 488, 510
BceAI	ACGGC	1 cut(s)	527
BcoDI	GTCTC	2 cut(s)	104, 289
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	3 cut(s)	444, 447, 457
BlsI	GCNGC	3 cut(s)	445, 448, 458
BmeRI	GACNNNNNGTC	1 cut(s)	320
BmgT120I	GGNCC	3 cut(s)	130, 131, 262
BmiI	GGNNCC	3 cut(s)	65, 132, 133
BpuEI	CTTGAG	1 cut(s)	239
Bsa29I	ATCGAT	2 cut(s)	72, 120
BsaBI	GATNNNNATC	2 cut(s)	68, 87
BsaI	GGTCTC	2 cut(s)	104, 289
BsaXI	ACNNNNNCTCC	3 cut(s)	396, 426, 518
Bse1I	ACTGG	1 cut(s)	285
Bse8I	GATNNNNATC	2 cut(s)	68, 87
BseCI	ATCGAT	2 cut(s)	72, 120
BseGI	GGATG	5 cut(s)	65, 98, 229, 277, 499
BseJI	GATNNNNATC	2 cut(s)	68, 87
BseNI	ACTGG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	443, 455, 458
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	3 cut(s)	132, 264, 294
BshVI	ATCGAT	2 cut(s)	72, 120
BsmAI	GTCTC	2 cut(s)	104, 289
BsnI	GGCC	3 cut(s)	132, 264, 294
Bso31I	GGTCTC	2 cut(s)	104, 289
Bsp120I	GGGCCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	4 cut(s)	17, 63, 73, 121
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	3 cut(s)	132, 264, 294
BspDI	ATCGAT	2 cut(s)	72, 120
BspLI	GGNNCC	3 cut(s)	65, 132, 133
BspPI	GGATC	3 cut(s)	25, 58, 71
BspTNI	GGTCTC	2 cut(s)	104, 289
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	4 cut(s)	17, 63, 73, 121
Bst6I	CTCTTC	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	44, 48, 52
BstF5I	GGATG	5 cut(s)	65, 98, 229, 277, 499
BstKTI	GATC	4 cut(s)	20, 66, 76, 124
BstMAI	GTCTC	2 cut(s)	104, 289
BstMBI	GATC	4 cut(s)	17, 63, 73, 121
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	443, 455, 458
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
Bsu15I	ATCGAT	2 cut(s)	72, 120
BsuRI	GGCC	3 cut(s)	132, 264, 294
BsuTUI	ATCGAT	2 cut(s)	72, 120
BtgZI	GCGATG	1 cut(s)	529
BtsCI	GGATG	5 cut(s)	65, 98, 229, 277, 499
BtsI	GCAGTG	2 cut(s)	13, 490
BtsIMutI	CAGTG	2 cut(s)	13, 490
Cac8I	GCNNGC	3 cut(s)	44, 48, 52
Cfr13I	GGNCC	3 cut(s)	130, 131, 262
ClaI	ATCGAT	2 cut(s)	72, 120
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	2 cut(s)	32, 296
CviJI	RGCY	7 cut(s)	54, 132, 181, 264, 294, 449, 456
CviKI_1	RGCY	7 cut(s)	54, 132, 181, 264, 294, 449, 456
CviQI	GTAC	1 cut(s)	378
DpnI	GATC	4 cut(s)	19, 65, 75, 123
DpnII	GATC	4 cut(s)	17, 63, 73, 121
DriI	GACNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	524
Eam1105I	GACNNNNNGTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	134
Eco31I	GGTCTC	2 cut(s)	104, 289
EcoO109I	RGGNCCY	2 cut(s)	131, 262
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	2 cut(s)	35, 299
FaiI	YATR	8 cut(s)	33, 69, 117, 297, 327, 390, 399, 401
FatI	CATG	2 cut(s)	31, 295
FauNDI	CATATG	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	444, 447, 457
FokI	GGATG	5 cut(s)	72, 85, 236, 284, 506
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	444, 447, 457
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	3 cut(s)	444, 447, 457
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	3 cut(s)	132, 264, 294
Hin1II	CATG	2 cut(s)	35, 299
HinfI	GANTC	1 cut(s)	26
HphI	GGTGA	2 cut(s)	12, 440
Hpy166II	GTNNAC	2 cut(s)	202, 314
Hpy188III	TCNNGA	4 cut(s)	80, 193, 218, 269
Hpy8I	GTNNAC	2 cut(s)	202, 314
HpyAV	CCTTC	2 cut(s)	275, 391
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	50, 138, 443, 459
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	35, 299
Kzo9I	GATC	4 cut(s)	17, 63, 73, 121
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	9 cut(s)	36, 40, 60, 148, 245, 254, 266, 273, 305
Lsp1109I	GCAGC	3 cut(s)	443, 455, 458
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	462
MalI	GATC	4 cut(s)	19, 65, 75, 123
MboI	GATC	4 cut(s)	17, 63, 73, 121
MboII	GAAGA	1 cut(s)	68
MfeI	CAATTG	1 cut(s)	205
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	5 cut(s)	105, 140, 205, 352, 364
MluNI	TGGCCA	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	7 cut(s)	155, 214, 398, 424, 484, 515, 525
Mox20I	TGGCCA	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	249, 363
Msp20I	TGGCCA	1 cut(s)	294
MunI	CAATTG	1 cut(s)	205
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	4 cut(s)	17, 63, 73, 121
NlaIII	CATG	2 cut(s)	35, 299
NlaIV	GGNNCC	3 cut(s)	65, 132, 133
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	445, 448, 458
PshBI	ATTAAT	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	65, 132, 133
PspOMI	GGGCCC	1 cut(s)	130
PspPI	GGNCC	3 cut(s)	130, 131, 262
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	249, 363
SatI	GCNGC	3 cut(s)	444, 447, 457
Sau3AI	GATC	4 cut(s)	17, 63, 73, 121
Sau96I	GGNCC	3 cut(s)	130, 131, 262
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	5 cut(s)	56, 179, 383, 465, 536
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	5 cut(s)	105, 140, 205, 352, 364
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	1 cut(s)	348
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	72, 120
TasI	AATT	5 cut(s)	105, 140, 205, 352, 364
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	249, 363
Tru9I	TTAA	2 cut(s)	249, 363
TscAI	CASTG	2 cut(s)	13, 490
TseI	GCWGC	3 cut(s)	443, 446, 456
TspDTI	ATGAA	2 cut(s)	99, 377
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	13, 490
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	1 cut(s)	140
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.