Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002983.1

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Reverse (-)

295824 .. 296271

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002983.1_g000064.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggtgggtgttctgcttagtgatttgaagcttagagatgatggtgttctgcttcacattgatttggttgtaggaaagcagcgattaggccttcttgatgatgaactggtctctagtgtccatgatattagtgatggtggacttctagtctatgcctttgagatggcatttactgggaattgtggcattaatttggacgaaactaccttctttcataagggacatatgggacgaagtgttggtggtagtggaggtgaggggggtgttgtagcagcctttggctgcaatgtgggtagtgatgatggtggcagtggcgaggatggggttgaagtgctacggcaatggggaggggagaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

120

Amino Acids

12.51

Weight (kDa)

4.54

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	28, 329
AhdI	GACNNNNNGTC	1 cut(s)	146
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	3 cut(s)	79, 272, 282
AseI	ATTAAT	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	91, 269, 284
BccI	CCATC	5 cut(s)	35, 128, 157, 296, 314
BceAI	ACGGC	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	114, 146
BisI	GCNGC	3 cut(s)	80, 273, 283
BlsI	GCNGC	3 cut(s)	81, 274, 284
BmeRI	GACNNNNNGTC	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	111, 178
Bse3DI	GCAATG	2 cut(s)	292, 347
BseGI	GGATG	1 cut(s)	325
BseMI	GCAATG	2 cut(s)	292, 347
BseNI	ACTGG	2 cut(s)	111, 178
BseXI	GCAGC	3 cut(s)	91, 269, 284
BshFI	GGCC	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	234, 243
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	234, 243
BsnI	GGCC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	115
BsrDI	GCAATG	2 cut(s)	292, 347
BsrI	ACTGG	2 cut(s)	111, 178
Bst6I	CTCTTC	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	17, 32
BstF5I	GGATG	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	91, 269, 284
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	316
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	4 cut(s)	31, 90, 275, 282
CviKI_1	RGCY	4 cut(s)	31, 90, 275, 282
DdeI	CTNAG	2 cut(s)	17, 32
DriI	GACNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	350
Eam1105I	GACNNNNNGTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	125
FaiI	YATR	5 cut(s)	123, 153, 216, 225, 227
FaqI	GGGAC	2 cut(s)	234, 243
FatI	CATG	1 cut(s)	121
FauNDI	CATATG	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	80, 273, 283
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	3 cut(s)	80, 273, 283
FspBI	CTAG	2 cut(s)	114, 146
GluI	GCNGC	3 cut(s)	80, 273, 283
HaeIII	GGCC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	29
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	101, 217
HpyCH4V	TGCA	1 cut(s)	285
HpyF3I	CTNAG	2 cut(s)	17, 32
Hsp92II	CATG	1 cut(s)	125
LpnPI	CCDG	2 cut(s)	92, 159
Lsp1109I	GCAGC	3 cut(s)	91, 269, 284
MaeI	CTAG	2 cut(s)	114, 146
MluCI	AATT	2 cut(s)	178, 190
MnlI	CCTC	4 cut(s)	245, 250, 310, 341
MseI	TTAA	1 cut(s)	189
NdeI	CATATG	1 cut(s)	225
NlaIII	CATG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	81, 274, 284
PshBI	ATTAAT	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	80, 273, 283
SetI	ASST	3 cut(s)	33, 209, 256
SgeI	CNNG	7 cut(s)	107, 119, 126, 134, 158, 186, 328
Sse9I	AATT	2 cut(s)	178, 190
SseBI	AGGCCT	1 cut(s)	90
SspMI	CTAG	2 cut(s)	114, 146
StuI	AGGCCT	1 cut(s)	90
TasI	AATT	2 cut(s)	178, 190
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	3 cut(s)	79, 272, 282
TspDTI	ATGAA	2 cut(s)	117, 203
TspRI	CASTG	1 cut(s)	316
VspI	ATTAAT	1 cut(s)	189
XspI	CTAG	2 cut(s)	114, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.