Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011973.1

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

8551 .. 8952

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011973.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgtggctttgctctttcttgattgtgaacaattgccctgaccttgaggatgttatgtatctgaagccagtgtttgagggaattcaaggccttcttgatgatgaattggtctctggtggccatgacattagtgatggtggacttctggtctatgccgttgagatggcatttgttgggaattgtggcattaatttggacgaaagtaccttctttcataagggacatataggaggaagtgttggtggtggcgcagcctttggctgcaatgtgggtagtgatggtggtggcagtggcgaggatggggttgaaatgttgcggcgatggggaggggagaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

113

Amino Acids

11.87

Weight (kDa)

4.3

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	86, 308
AhdI	GACNNNNNGTC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	2 cut(s)	88, 118
ApeKI	GCWGC	2 cut(s)	251, 261
ApoI	RAATTY	1 cut(s)	81
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	251
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BalI	TGGCCA	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	248, 263
BccI	CCATC	5 cut(s)	128, 157, 272, 293, 315
BceAI	ACGGC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	115
BisI	GCNGC	3 cut(s)	252, 262, 317
BlsI	GCNGC	3 cut(s)	253, 263, 318
BmeRI	GACNNNNNGTC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	55, 304
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	248, 263
BshFI	GGCC	2 cut(s)	90, 120
BslFI	GGGAC	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	90, 120
Bso31I	GGTCTC	1 cut(s)	115
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	2 cut(s)	90, 120
BspTNI	GGTCTC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	55, 304
BstHHI	GCGC	1 cut(s)	251
BstMAI	GTCTC	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	248, 263
BsuRI	GGCC	2 cut(s)	90, 120
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	55, 304
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	75, 295
CfoI	GCGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	6 cut(s)	7, 67, 90, 120, 254, 261
CviKI_1	RGCY	6 cut(s)	7, 67, 90, 120, 254, 261
CviQI	GTAC	1 cut(s)	204
DriI	GACNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	329
Eam1105I	GACNNNNNGTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	329
Eco147I	AGGCCT	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	81
FaeI	CATG	1 cut(s)	125
FaiI	YATR	6 cut(s)	56, 123, 153, 216, 225, 227
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	252, 262, 317
FokI	GGATG	2 cut(s)	62, 311
Fsp4HI	GCNGC	3 cut(s)	252, 262, 317
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	3 cut(s)	252, 262, 317
HaeIII	GGCC	2 cut(s)	90, 120
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	28, 140
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	19, 95
Hpy8I	GTNNAC	2 cut(s)	28, 140
HpyAV	CCTTC	2 cut(s)	101, 217
HpyCH4V	TGCA	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	1 cut(s)	249
LpnPI	CCDG	4 cut(s)	51, 81, 99, 131
Lsp1109I	GCAGC	2 cut(s)	248, 263
MfeI	CAATTG	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	5 cut(s)	31, 81, 104, 178, 190
MluNI	TGGCCA	1 cut(s)	120
MnlI	CCTC	5 cut(s)	40, 70, 224, 289, 320
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	120
MunI	CAATTG	1 cut(s)	31
NlaIII	CATG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	253, 263, 318
PshBI	ATTAAT	1 cut(s)	189
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	252, 262, 317
SetI	ASST	2 cut(s)	45, 209
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	31, 81, 104, 178, 190
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	316
StuI	AGGCCT	1 cut(s)	90
TasI	AATT	5 cut(s)	31, 81, 104, 178, 190
TauI	GCSGC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	75, 295
TseI	GCWGC	2 cut(s)	251, 261
TspDTI	ATGAA	2 cut(s)	117, 203
TspRI	CASTG	2 cut(s)	75, 295
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.