Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014425.1

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Reverse (-)

11925 .. 12245

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014425.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atggtgggtgttctgcttcacattgatttgggttgcaggaaagcagcgattatgtggcttttctctttcttgattgtgaacaattgccctgaccttgaggatgttccgtatctgaagcaagtgtttgagggagttcagtgccttcttgatgatgaactggtctctggtggccatgatattagtgatggtggacttctggtctatgccgttaagatggcatttgctgggaattgtggcattaatttggatgaaagtaccttctttcataagggacacataggaggaagtggcagtgaggggggggggggggtgttacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

106

Amino Acids

11.24

Weight (kDa)

4.56

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	256
AhdI	GACNNNNNGTC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	44
AseI	ATTAAT	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	179, 208
BceAI	ACGGC	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmeRI	GACNNNNNGTC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	106, 253
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	318
BstF5I	GGATG	2 cut(s)	106, 253
BstMAI	GTCTC	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	106, 253
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	143, 298
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	2 cut(s)	58, 171
CviKI_1	RGCY	2 cut(s)	58, 171
CviQI	GTAC	1 cut(s)	255
DriI	GACNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	134
FaeI	CATG	1 cut(s)	176
FaiI	YATR	5 cut(s)	53, 174, 204, 267, 278
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	113, 260
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	79, 191
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	70, 146
Hpy8I	GTNNAC	2 cut(s)	79, 191
HpyAV	CCTTC	2 cut(s)	152, 268
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4V	TGCA	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	176
LpnPI	CCDG	6 cut(s)	22, 102, 143, 150, 182, 210
Lsp1109I	GCAGC	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	312
MfeI	CAATTG	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	3 cut(s)	82, 229, 241
MluNI	TGGCCA	1 cut(s)	171
MnlI	CCTC	4 cut(s)	91, 121, 275, 289
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	2 cut(s)	210, 240
Msp20I	TGGCCA	1 cut(s)	171
MunI	CAATTG	1 cut(s)	82
NlaIII	CATG	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	210, 240
SatI	GCNGC	1 cut(s)	45
SetI	ASST	2 cut(s)	96, 260
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	3 cut(s)	82, 229, 241
TaaI	ACNGT	1 cut(s)	318
TasI	AATT	3 cut(s)	82, 229, 241
Tru1I	TTAA	2 cut(s)	210, 240
Tru9I	TTAA	2 cut(s)	210, 240
TscAI	CASTG	2 cut(s)	143, 298
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	168, 254, 264
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	143, 298
VspI	ATTAAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.