Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

55248499 .. 55249581

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG425300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTGGGTGTTCTGCTTAGAGATTTGAAGTTTGGAGATGATGGTGTTCTGCTTCACATTGATTTGGGTTGCAGGAAAGCAGCGATTAGGTGGCTTTGCTCTTTCTTGATTGTGAACAATTGCCCTGACCTTGAGGATGTTCCGTATCTGAAGCAAGTGTTTGAGGGAGTTCAGTGCCTTCTTGATGATGAACTGGTCTCTGGTGGCCATGATATTAGTGATGGTGGACTTCTGGTCTATGCCGTTAAGATGGCATTTGCTGGGAATTGTGGCATTAATTTGGATGAAAGTACCTTCTTTCATAAGGGACACATAGGAGGAAGTGGCGGTGGGGGGGGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

114

Amino Acids

12.05

Weight (kDa)

4.75

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	44 - 100	2.1e-09	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	28
AhdI	GACNNNNNGTC	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	80
AseI	ATTAAT	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	3 cut(s)	35, 215, 244
BceAI	ACGGC	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmeRI	GACNNNNNGTC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	142, 289
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	92
BseYI	CCCAGC	1 cut(s)	260
BshFI	GGCC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	142, 289
BstMAI	GTCTC	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	142, 289
BtsIMutI	CAGTG	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	2 cut(s)	94, 207
CviKI_1	RGCY	2 cut(s)	94, 207
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	205
Eam1105I	GACNNNNNGTC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	170
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	210, 240, 303, 314
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	149, 296
Fsp4HI	GCNGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	115, 227
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	106, 182
Hpy8I	GTNNAC	2 cut(s)	115, 227
HpyAV	CCTTC	2 cut(s)	188, 304
HpyCH4V	TGCA	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	212
LpnPI	CCDG	6 cut(s)	58, 138, 179, 186, 218, 246
Lsp1109I	GCAGC	1 cut(s)	92
MfeI	CAATTG	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	3 cut(s)	118, 265, 277
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	3 cut(s)	127, 157, 311
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	2 cut(s)	246, 276
Msp20I	TGGCCA	1 cut(s)	207
MunI	CAATTG	1 cut(s)	118
NlaIII	CATG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	82
PshBI	ATTAAT	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	260
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	246, 276
SatI	GCNGC	1 cut(s)	81
SetI	ASST	3 cut(s)	92, 132, 296
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	118, 265, 277
SsiI	CCGC	1 cut(s)	327
TasI	AATT	3 cut(s)	118, 265, 277
Tru1I	TTAA	2 cut(s)	246, 276
Tru9I	TTAA	2 cut(s)	246, 276
TscAI	CASTG	1 cut(s)	179
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	3 cut(s)	204, 290, 300
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.