Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

55818585 .. 55836104

Gene Structure 17520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG324700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTTCTTCTTTTCGTCTTCAACTTGAGCTTTTTGTCTCGTGCTTTTTCAACAGAGCTTCTGAAAGCAGAGATTAGGTGGCTTTGCTCTTTCTTGATTGTGAACAATTGCCTTAACCTTGAGGATGTTCCGTATCTGAAGCGAGTGTTTGAGGGAGTTCAGTGCCTTCTTGATGATGAACTGGTCTCTGGTGGCCATGATATTAGTGATGGTGGACTTCTGGTCTATGCCGTTGAGATGGCATTTGCTGGGAATTGTGGCATTAATTTGGATGAAAGTACCTTCTTTCATAAGGGACATATAGGAGGAAGTGGCAGTGAGGGGGCTGTTGCAGTAGCCTTTGGCTGCAACGTGGGTAGTGATGGTGGTGGCAGTGGCGAGGATGGGGTTGAAGTGCGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

134

Amino Acids

14.3

Weight (kDa)

4.48

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	40 - 108	1.5e-10	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	397, 400
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	22, 51, 392
AhdI	GACNNNNNGTC	1 cut(s)	221
AluBI	AGCT	2 cut(s)	30, 58
AluI	AGCT	2 cut(s)	30, 58
Alw26I	GTCTC	2 cut(s)	42, 190
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	345
AseI	ATTAAT	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	195
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	4 cut(s)	203, 232, 356, 377
BceAI	ACGGC	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	42, 190
BisI	GCNGC	2 cut(s)	346, 398
BlsI	GCNGC	2 cut(s)	347, 399
BmeRI	GACNNNNNGTC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	10
BpuEI	CTTGAG	2 cut(s)	46, 140
BsaI	GGTCTC	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	186
BseGI	GGATG	3 cut(s)	130, 277, 388
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	332
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	2 cut(s)	42, 190
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	397, 400
BspANI	GGCC	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
BstF5I	GGATG	3 cut(s)	130, 277, 388
BstMAI	GTCTC	2 cut(s)	42, 190
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	130, 277, 388
BtsI	GCAGTG	2 cut(s)	322, 379
BtsIMutI	CAGTG	3 cut(s)	167, 322, 379
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	7 cut(s)	30, 58, 82, 195, 326, 338, 345
CviKI_1	RGCY	7 cut(s)	30, 58, 82, 195, 326, 338, 345
CviQI	GTAC	1 cut(s)	279
DriI	GACNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	158
FaeI	CATG	1 cut(s)	200
FaiI	YATR	5 cut(s)	198, 228, 291, 300, 302
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	346, 398
FokI	GGATG	3 cut(s)	137, 284, 395
Fsp4HI	GCNGC	2 cut(s)	346, 398
GluI	GCNGC	2 cut(s)	346, 398
GsaI	CCCAGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	103, 215
Hpy188I	TCNGA	2 cut(s)	63, 138
Hpy188III	TCNNGA	2 cut(s)	94, 170
Hpy8I	GTNNAC	2 cut(s)	103, 215
HpyAV	CCTTC	2 cut(s)	176, 292
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	332, 348
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	200
LpnPI	CCDG	4 cut(s)	167, 174, 206, 234
Lsp1109I	GCAGC	1 cut(s)	332
MaeII	ACGT	1 cut(s)	351
MboII	GAAGA	1 cut(s)	10
MfeI	CAATTG	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	3 cut(s)	106, 253, 265
MluNI	TGGCCA	1 cut(s)	195
MnlI	CCTC	5 cut(s)	115, 145, 299, 313, 373
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	114, 264
Msp20I	TGGCCA	1 cut(s)	195
MunI	CAATTG	1 cut(s)	106
NlaIII	CATG	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	347, 399
PshBI	ATTAAT	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	114, 264
SatI	GCNGC	2 cut(s)	346, 398
SetI	ASST	6 cut(s)	32, 60, 80, 120, 284, 354
SmlI	CTYRAG	2 cut(s)	25, 119
SmoI	CTYRAG	2 cut(s)	25, 119
Sse9I	AATT	3 cut(s)	106, 253, 265
SsiI	CCGC	2 cut(s)	397, 400
TaiI	ACGT	1 cut(s)	354
TasI	AATT	3 cut(s)	106, 253, 265
TauI	GCSGC	1 cut(s)	400
Tru1I	TTAA	2 cut(s)	114, 264
Tru9I	TTAA	2 cut(s)	114, 264
TscAI	CASTG	3 cut(s)	167, 322, 379
TseI	GCWGC	1 cut(s)	345
TspDTI	ATGAA	3 cut(s)	192, 278, 288
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	3 cut(s)	167, 322, 379
VspI	ATTAAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.