Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

83509858 .. 83510208

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTGGGAGCGTGCTCGCAAGCCGGGGATGGATCCATATCGATCTTCTTGATGAAAATCCTAGACCGAGACCCATATCGATCTGTCGGGCCCCCGCAAATTCCTCTTTCTAATGTTGGAGTAATTGCTCGGACTTGGAGATGGTGGGTGTTCGCTAGAGATTTGAAGCTTGGAGATGATGGTGTTCTGCTTCACATTGATTTGGTTGCGGTGAAAGCGGCGATTAGGTGGCTTTGCTCTTTCTTGATTGTGAACAATTGCCACGACCTTGAGGATGTTCCGTATATGAAGGGAGTGTTGGAGGGAGTTCGGTGCCTTCTTGATGATGAACGGGTCTCTCGGTGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

116

Amino Acids

13.08

Weight (kDa)

6.05

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AciI	CCGC	3 cut(s)	95, 209, 218
AclWI	GGATC	2 cut(s)	27, 40
AcsI	RAATTY	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	63, 340
AlwI	GGATC	2 cut(s)	27, 40
AoxI	GGCC	1 cut(s)	89
ApaI	GGGCCC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	89, 90
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	3 cut(s)	23, 135, 173
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	63, 340
BfaI	CTAG	2 cut(s)	62, 156
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	89, 90
BmiI	GGNNCC	4 cut(s)	34, 91, 92, 314
BmrFI	CCNGG	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	25
Bsa29I	ATCGAT	2 cut(s)	41, 79
BsaBI	GATNNNNATC	2 cut(s)	37, 56
BsaI	GGTCTC	2 cut(s)	63, 340
BsaJI	CCNNGG	1 cut(s)	24
Bse8I	GATNNNNATC	2 cut(s)	37, 56
BseCI	ATCGAT	2 cut(s)	41, 79
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	34, 280
BseJI	GATNNNNATC	2 cut(s)	37, 56
BseSI	GKGCMC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	312
BshVI	ATCGAT	2 cut(s)	41, 79
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	24
BsmAI	GTCTC	2 cut(s)	63, 340
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	2 cut(s)	63, 340
Bsp120I	GGGCCC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	17, 93
Bsp143I	GATC	3 cut(s)	32, 42, 80
BspACI	CCGC	3 cut(s)	95, 209, 218
BspANI	GGCC	1 cut(s)	91
BspDI	ATCGAT	2 cut(s)	41, 79
BspLI	GGNNCC	4 cut(s)	34, 91, 92, 314
BspPI	GGATC	2 cut(s)	27, 40
BspT107I	GGYRCC	1 cut(s)	312
BspTNI	GGTCTC	2 cut(s)	63, 340
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	3 cut(s)	32, 42, 80
BstC8I	GCNNGC	3 cut(s)	13, 17, 21
BstF5I	GGATG	2 cut(s)	34, 280
BstKTI	GATC	3 cut(s)	35, 45, 83
BstMAI	GTCTC	2 cut(s)	63, 340
BstMBI	GATC	3 cut(s)	32, 42, 80
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
Bsu15I	ATCGAT	2 cut(s)	41, 79
BsuRI	GGCC	1 cut(s)	91
BsuTUI	ATCGAT	2 cut(s)	41, 79
BtsCI	GGATG	2 cut(s)	34, 280
Cac8I	GCNNGC	3 cut(s)	13, 17, 21
Cfr13I	GGNCC	2 cut(s)	89, 90
ClaI	ATCGAT	2 cut(s)	41, 79
CviJI	RGCY	4 cut(s)	23, 91, 169, 232
CviKI_1	RGCY	4 cut(s)	23, 91, 169, 232
DpnI	GATC	3 cut(s)	34, 44, 82
DpnII	GATC	3 cut(s)	32, 42, 80
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	2 cut(s)	63, 340
EcoO109I	RGGNCCY	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	93
FaiI	YATR	4 cut(s)	38, 76, 285, 287
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	2 cut(s)	41, 287
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	62, 156
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	167
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	3 cut(s)	49, 244, 320
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	283, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	32, 42, 80
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	1 cut(s)	37
MaeI	CTAG	2 cut(s)	62, 156
MalI	GATC	3 cut(s)	34, 44, 82
MboI	GATC	3 cut(s)	32, 42, 80
MboII	GAAGA	1 cut(s)	37
MfeI	CAATTG	1 cut(s)	256
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	17, 93
MluCI	AATT	3 cut(s)	99, 123, 256
MmeI	TCCRAC	2 cut(s)	97, 279
MnlI	CCTC	3 cut(s)	114, 265, 295
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	3 cut(s)	32, 42, 80
NlaIV	GGNNCC	4 cut(s)	34, 91, 92, 314
PkrI	GCNGC	1 cut(s)	220
PspN4I	GGNNCC	4 cut(s)	34, 91, 92, 314
PspOMI	GGGCCC	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	89, 90
PsuI	RGATCY	1 cut(s)	32
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	3 cut(s)	32, 42, 80
Sau96I	GGNCC	2 cut(s)	89, 90
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	2 cut(s)	17, 93
SetI	ASST	3 cut(s)	171, 230, 270
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	99, 123, 256
SsiI	CCGC	3 cut(s)	95, 209, 218
SspMI	CTAG	2 cut(s)	62, 156
StyD4I	CCNGG	1 cut(s)	23
TaqI	TCGA	2 cut(s)	41, 79
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	99, 123, 256
TauI	GCSGC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	68, 302, 342
TspGWI	ACGGA	1 cut(s)	270
XapI	RAATTY	1 cut(s)	99
XspI	CTAG	2 cut(s)	62, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.