Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Reverse (-)

13399800 .. 13405411

Gene Structure 5612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022857

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATGGAAGGGAATTCAAACACTGTGACGCCTACTCCCACAAGCGTAGAGGATGCATCAAGCATAGGGACTTCAATTCCCTCATTCCCTGCTTCTGAAATAAGCCCTACTGCTGCTGCTGCGATTGTTTCAGTTCCACCTGGTCCTACTGCCCTTGTCTCAGATGATTATGATGAGCAAGAGGAAGTACTGAGGCAATTTGATTTGAATACGGTGTATGGGCCGTGTTTTGGGATCACCAGATTCGCACGGAAAGCAGCGATTAGGTGGCTTTGCTCTTTCTTGATTGTGAACAATTGCCCTGATCTTGAGGATGTTCCGTATCTGAAGCGAGAGTTTGAGGGAGTTCAGGGCCTTCTTGATGATGAACTGGTCTCTGGTGGCCATGATATTAGTGATGGTGGACTTCTGGTCTATGCCGTTGAGATGGCATTTGCTAGGAATTGTGTCATTAATTTGGACGAAAGTACCTTATTTCATAAGGGACATATGGGAGGAAGTGTTGGAGGTAGTGGCGGTGAGGGGGGTGTTGCAGCAGACTTTGGCTGCAACATGGGTAGTGATGGTGGTGGCAGTGGCGAGGATGGGGTTGAAGTGTTGCGGCGATGGGAAAGGGAGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

209

Amino Acids

22.0

Weight (kDa)

4.32

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	55 - 84	2.2e-06	DNA polymerase delta, subunit 4
AIRS_C	PF02769	103 - 162	1.3e-07	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	516, 601
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	189, 469
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	18, 75, 208, 593
AhdI	GACNNNNNGTC	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	163, 379
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	3 cut(s)	221, 352, 382
ApeKI	GCWGC	6 cut(s)	113, 116, 119, 257, 533, 546
ApoI	RAATTY	1 cut(s)	13
AseI	ATTAAT	1 cut(s)	453
AspS9I	GGNCC	3 cut(s)	143, 221, 352
AsuHPI	GGTGA	2 cut(s)	229, 530
AvaII	GGWCC	1 cut(s)	143
BaeI	ACNNNNGTAYC	2 cut(s)	451, 484
BalI	TGGCCA	1 cut(s)	384
BbvI	GCAGC	6 cut(s)	100, 103, 106, 269, 533, 545
BccI	CCATC	5 cut(s)	392, 421, 557, 578, 600
BceAI	ACGGC	2 cut(s)	208, 404
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	163, 379
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	7 cut(s)	114, 117, 120, 258, 534, 547, 602
BlsI	GCNGC	7 cut(s)	115, 118, 121, 259, 535, 548, 603
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	143
BmeRI	GACNNNNNGTC	1 cut(s)	410
BmgT120I	GGNCC	3 cut(s)	143, 221, 352
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	43, 65
BpuEI	CTTGAG	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	379
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	141
BseGI	GGATG	3 cut(s)	58, 319, 589
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	174, 182
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	6 cut(s)	100, 103, 106, 269, 533, 545
BshFI	GGCC	3 cut(s)	223, 354, 384
BslFI	GGGAC	2 cut(s)	82, 498
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	163, 379
BsmFI	GGGAC	2 cut(s)	82, 498
BsnI	GGCC	3 cut(s)	223, 354, 384
Bso31I	GGTCTC	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	234, 304
BspACI	CCGC	2 cut(s)	516, 601
BspANI	GGCC	3 cut(s)	223, 354, 384
BspCNI	CTCAG	2 cut(s)	173, 183
BspPI	GGATC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	234, 304
BssNI	GRCGYC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	25, 214
Bst6I	CTCTTC	1 cut(s)	614
BstACI	GRCGYC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	160, 191
BstF5I	GGATG	3 cut(s)	58, 319, 589
BstKTI	GATC	2 cut(s)	237, 307
BstMAI	GTCTC	2 cut(s)	163, 379
BstMBI	GATC	2 cut(s)	234, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 254
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	6 cut(s)	100, 103, 106, 269, 533, 545
BsuRI	GGCC	3 cut(s)	223, 354, 384
BtgZI	GCGATG	1 cut(s)	619
BtsCI	GGATG	3 cut(s)	58, 319, 589
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	21, 580
Cfr13I	GGNCC	3 cut(s)	143, 221, 352
CseI	GACGC	1 cut(s)	37
CsiI	ACCWGGT	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	188, 468
CviAII	CATG	2 cut(s)	386, 553
CviJI	RGCY	6 cut(s)	105, 223, 271, 354, 384, 546
CviKI_1	RGCY	6 cut(s)	105, 223, 271, 354, 384, 546
CviQI	GTAC	2 cut(s)	188, 468
DdeI	CTNAG	2 cut(s)	160, 191
DpnI	GATC	2 cut(s)	236, 306
DpnII	GATC	2 cut(s)	234, 304
DriI	GACNNNNNGTC	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	614
Eam1105I	GACNNNNNGTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	614
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	58
FaeI	CATG	2 cut(s)	389, 556
FaiI	YATR	9 cut(s)	65, 171, 219, 387, 417, 480, 489, 491, 554
FaqI	GGGAC	2 cut(s)	82, 498
FatI	CATG	2 cut(s)	385, 552
FauNDI	CATATG	1 cut(s)	489
Fnu4HI	GCNGC	7 cut(s)	114, 117, 120, 258, 534, 547, 602
FokI	GGATG	3 cut(s)	65, 326, 596
Fsp4HI	GCNGC	7 cut(s)	114, 117, 120, 258, 534, 547, 602
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	7 cut(s)	114, 117, 120, 258, 534, 547, 602
HaeIII	GGCC	3 cut(s)	223, 354, 384
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	389, 556
HinfI	GANTC	1 cut(s)	243
HphI	GGTGA	2 cut(s)	229, 530
Hpy166II	GTNNAC	2 cut(s)	292, 404
Hpy188I	TCNGA	3 cut(s)	97, 163, 327
Hpy188III	TCNNGA	3 cut(s)	283, 308, 359
Hpy8I	GTNNAC	2 cut(s)	292, 404
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	2 cut(s)	25, 214
HpyCH4V	TGCA	3 cut(s)	56, 533, 549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 254
HpyF3I	CTNAG	2 cut(s)	160, 191
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	389, 556
Kzo9I	GATC	2 cut(s)	234, 304
LpnPI	CCDG	9 cut(s)	102, 126, 153, 253, 315, 335, 356, 363, 395
Lsp1109I	GCAGC	6 cut(s)	100, 103, 106, 269, 533, 545
LweI	GCATC	2 cut(s)	43, 65
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	236, 306
MboI	GATC	2 cut(s)	234, 304
MfeI	CAATTG	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	6 cut(s)	13, 75, 197, 295, 442, 454
MluNI	TGGCCA	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	484
Mox20I	TGGCCA	1 cut(s)	384
Mph1103I	ATGCAT	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	119, 254
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	2 cut(s)	234, 304
NlaIII	CATG	2 cut(s)	389, 556
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	243
PkrI	GCNGC	7 cut(s)	115, 118, 121, 259, 535, 548, 603
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspPI	GGNCC	3 cut(s)	143, 221, 352
RsaI	GTAC	2 cut(s)	189, 469
RsaNI	GTAC	2 cut(s)	188, 468
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	7 cut(s)	114, 117, 120, 258, 534, 547, 602
Sau3AI	GATC	2 cut(s)	234, 304
Sau96I	GGNCC	3 cut(s)	143, 221, 352
ScaI	AGTACT	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	4 cut(s)	142, 269, 473, 511
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	2 cut(s)	43, 65
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	6 cut(s)	13, 75, 197, 295, 442, 454
SsiI	CCGC	2 cut(s)	516, 601
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	25, 214
TasI	AATT	6 cut(s)	13, 75, 197, 295, 442, 454
TatI	WGTACW	1 cut(s)	187
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	28, 580
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	6 cut(s)	113, 116, 119, 257, 533, 546
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	381, 467
TspGWI	ACGGA	2 cut(s)	265, 309
TspRI	CASTG	2 cut(s)	28, 580
VpaK11BI	GGWCC	1 cut(s)	143
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	1 cut(s)	13
XspI	CTAG	1 cut(s)	438
ZrmI	AGTACT	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.