Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

5026786 .. 5027250

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTGGAGAAAGTAGCGATTAGGTGGCTTTGCTCTTTCTTGATTGTGAACAATTGCCCTGATCTTGAGGATGTTCCGTATCTGAAACGAGTGTTTGAGGGAGTTCAGGGCCTTCTTGATGATAAACTAGTCTCTGGTGGCCATGATATTAGTGATGGTGGACTTCTGGTCTATGCCGTTGAGATGGCATTTGTTGGGAATTGTGGCATTAATTTGGACGAAAGTACCTTCTTTCATAAGGGACATATGGGAGGAAGAGTTGGTGGTAGTGGCGGTGAGGGGGGTGTTGCAGCAGCCTTTGGCTGCAACGTGGGTAGTGATGGTGGTGGCAGTGGCGAGGATGGGGTTGAAGTGCTGCGGCGATGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

124

Amino Acids

12.83

Weight (kDa)

4.63

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	22 - 80	2.8e-09	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	273, 358
AcoI	YGGCCR	1 cut(s)	139
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	350
AhdI	GACNNNNNGTC	1 cut(s)	167
AhlI	ACTAGT	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	2 cut(s)	109, 139
ApeKI	GCWGC	4 cut(s)	290, 293, 303, 355
AseI	ATTAAT	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	287
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BalI	TGGCCA	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	290, 302, 305, 342
BccI	CCATC	5 cut(s)	149, 178, 314, 335, 357
BceAI	ACGGC	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	136
BcuI	ACTAGT	1 cut(s)	127
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	5 cut(s)	291, 294, 304, 356, 359
BlsI	GCNGC	5 cut(s)	292, 295, 305, 357, 360
BmeRI	GACNNNNNGTC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
BseGI	GGATG	2 cut(s)	76, 346
BseXI	GCAGC	4 cut(s)	290, 302, 305, 342
BshFI	GGCC	2 cut(s)	111, 141
BslFI	GGGAC	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	2 cut(s)	111, 141
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	273, 358
BspANI	GGCC	2 cut(s)	111, 141
BssMI	GATC	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	76, 346
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	61
BstV1I	GCAGC	4 cut(s)	290, 302, 305, 342
BsuRI	GGCC	2 cut(s)	111, 141
BtsCI	GGATG	2 cut(s)	76, 346
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	5 cut(s)	28, 111, 141, 296, 303
CviKI_1	RGCY	5 cut(s)	28, 111, 141, 296, 303
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DriI	GACNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	250
Eam1105I	GACNNNNNGTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	109
FaeI	CATG	1 cut(s)	146
FaiI	YATR	5 cut(s)	144, 174, 237, 246, 248
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	246
Fnu4HI	GCNGC	5 cut(s)	291, 294, 304, 356, 359
FokI	GGATG	2 cut(s)	83, 353
Fsp4HI	GCNGC	5 cut(s)	291, 294, 304, 356, 359
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	5 cut(s)	291, 294, 304, 356, 359
HaeIII	GGCC	2 cut(s)	111, 141
Hin1II	CATG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	49, 161
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	3 cut(s)	40, 65, 116
Hpy8I	GTNNAC	2 cut(s)	49, 161
HpyAV	CCTTC	2 cut(s)	122, 238
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	290, 306
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	72, 92, 120, 152
Lsp1109I	GCAGC	4 cut(s)	290, 302, 305, 342
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	309
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	267
MfeI	CAATTG	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	3 cut(s)	52, 199, 211
MluNI	TGGCCA	1 cut(s)	141
MnlI	CCTC	5 cut(s)	61, 91, 245, 271, 331
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	141
MunI	CAATTG	1 cut(s)	52
NdeI	CATATG	1 cut(s)	246
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	146
PkrI	GCNGC	5 cut(s)	292, 295, 305, 357, 360
PshBI	ATTAAT	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	5 cut(s)	291, 294, 304, 356, 359
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	109
SetI	ASST	3 cut(s)	26, 230, 312
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SpeI	ACTAGT	1 cut(s)	127
Sse9I	AATT	3 cut(s)	52, 199, 211
SsiI	CCGC	2 cut(s)	273, 358
SspMI	CTAG	1 cut(s)	128
TaiI	ACGT	1 cut(s)	312
TasI	AATT	3 cut(s)	52, 199, 211
TauI	GCSGC	1 cut(s)	361
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	4 cut(s)	290, 293, 303, 355
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	337
VspI	ATTAAT	1 cut(s)	210
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.