Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009252.1

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

30147 .. 31274

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009252.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggagagctctgactctgatcctgattggtcgggttgtcgggatacgtttggaacagaggtcgcgaaacacagtgacaatgtccactgcttcgacaacgacttcttctccgacgccgcctccgattccgactgtgacgtcaactgcttcgccaacgatctattcgaccgtcgcgcctcctctgatcatccccccagcgactgcgtcctcgtctcgagatctaccaaaacccacccaaccccaaagcaccaaagtctgatctcaaaggttagggattcaggtccaattgatgattatgatgaccaagaggaggtgctgaggcaatttgatttgaacatggcgtatgggccgtgttttgggatcaccagattcgcactgtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

4.37

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AatII	GACGTC	1 cut(s)	141
AccII	CGCG	2 cut(s)	65, 174
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	2 cut(s)	14, 368
AcyI	GRCGYC	2 cut(s)	114, 138
AfiI	CCNNNNNNNGG	2 cut(s)	310, 356
AgsI	TTSAA	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	14, 368
AlwNI	CAGNNNCTG	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	281, 347
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	334
BciVI	GTATCC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	37
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	281, 347
Bpu10I	CCTNAGC	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	114, 138
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 104, 122, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 356
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	310, 356
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	2 cut(s)	169, 323
BseYI	CCCAGC	1 cut(s)	194
Bsh1236I	CGCG	2 cut(s)	65, 174
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	310, 356
BsmAI	GTCTC	1 cut(s)	217
BsmBI	CGTCTC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	6 cut(s)	19, 157, 184, 218, 258, 360
Bsp68I	TCGCGA	1 cut(s)	65
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	2 cut(s)	65, 174
BspPI	GGATC	2 cut(s)	14, 368
BssMI	GATC	6 cut(s)	19, 157, 184, 218, 258, 360
BssNI	GRCGYC	2 cut(s)	114, 138
Bst4CI	ACNGT	4 cut(s)	74, 134, 170, 378
BstACI	GRCGYC	2 cut(s)	114, 138
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	2 cut(s)	65, 174
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	6 cut(s)	22, 160, 187, 221, 261, 363
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	6 cut(s)	19, 157, 184, 218, 258, 360
BstMCI	CGRYCG	1 cut(s)	169
BstUI	CGCG	2 cut(s)	65, 174
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	79, 85, 374
BtuMI	TCGCGA	1 cut(s)	65
CaiI	CAGNNNCTG	1 cut(s)	201
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	281, 347
CseI	GACGC	2 cut(s)	122, 193
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	2 cut(s)	9, 349
CviKI_1	RGCY	2 cut(s)	9, 349
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	6 cut(s)	21, 159, 186, 220, 260, 362
DpnII	GATC	6 cut(s)	19, 157, 184, 218, 258, 360
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	1 cut(s)	340
FaiI	YATR	3 cut(s)	297, 338, 345
FatI	CATG	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	174
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	117
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	349
HgaI	GACGC	2 cut(s)	122, 193
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	114, 138
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	4 cut(s)	14, 125, 275, 369
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	85, 142
Hpy188I	TCNGA	7 cut(s)	13, 19, 112, 124, 130, 184, 258
Hpy188III	TCNNGA	5 cut(s)	23, 41, 64, 214, 216
Hpy8I	GTNNAC	2 cut(s)	85, 142
Hpy99I	CGWCG	2 cut(s)	116, 174
HpyCH4III	ACNGT	4 cut(s)	74, 134, 170, 378
HpyCH4IV	ACGT	2 cut(s)	47, 138
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	2 cut(s)	47, 138
Hsp92I	GRCGYC	2 cut(s)	114, 138
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	19, 157, 184, 218, 258, 360
LpnPI	CCDG	4 cut(s)	36, 208, 264, 379
MaeII	ACGT	2 cut(s)	47, 138
MaeIII	GTNAC	2 cut(s)	74, 134
MalI	GATC	6 cut(s)	21, 159, 186, 220, 260, 362
MboI	GATC	6 cut(s)	19, 157, 184, 218, 258, 360
MboII	GAAGA	1 cut(s)	97
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	2 cut(s)	285, 323
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	2 cut(s)	135, 153
MnlI	CCTC	8 cut(s)	52, 130, 187, 190, 218, 301, 304, 312
MunI	CAATTG	1 cut(s)	285
MvnI	CGCG	2 cut(s)	65, 174
NdeII	GATC	6 cut(s)	19, 157, 184, 218, 258, 360
NlaIII	CATG	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	74, 134
NruI	TCGCGA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 162
PfeI	GAWTC	3 cut(s)	125, 275, 369
PflFI	GACNNNGTC	2 cut(s)	80, 203
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	194
PspPI	GGNCC	2 cut(s)	281, 347
PstNI	CAGNNNCTG	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	218
PsyI	GACNNNGTC	2 cut(s)	80, 203
RruI	TCGCGA	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	11
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	6 cut(s)	19, 157, 184, 218, 258, 360
Sau96I	GGNCC	2 cut(s)	281, 347
SchI	GAGTC	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	7 cut(s)	11, 50, 63, 141, 270, 283, 315
Sfr274I	CTCGAG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	285, 323
SsiI	CCGC	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	11
TaaI	ACNGT	4 cut(s)	74, 134, 170, 378
TaiI	ACGT	2 cut(s)	50, 141
TaqI	TCGA	3 cut(s)	93, 165, 215
TasI	AATT	2 cut(s)	285, 323
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	125, 275, 369
TscAI	CASTG	3 cut(s)	79, 92, 381
TseFI	GTSAC	2 cut(s)	74, 134
Tsp45I	GTSAC	2 cut(s)	74, 134
TspRI	CASTG	3 cut(s)	79, 92, 381
Tth111I	GACNNNGTC	2 cut(s)	80, 203
VpaK11BI	GGWCC	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	214
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.