Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Reverse (-)

3640102 .. 3640606

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGACTTCTTCTCCGATGCAGCCTCTGATTGTAATTGTGACGTTAGCTGCTTCGCCACCGATCTCTTCGACCATCGCACCTCCTCCGATCATCCCCCCAGTGACTGCGTCCTCGTCTCAGGATCTACCAAAACCCACCCAACCCCAAAGCACCAAAGTCTTATCTCGTGATCTCAAAGATGATTTTGATGAGCAAGAGGAGGTGCTGAGGCAATTTGATTTGAACACGGCGTATGGGCCATGTTTTGGGATCACCAGATTTGAACGGTGGGAGCGTACCTGCAAGCTGGGGATGGATCCATATCGATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

4.95

Isoelectric Point (pI)

63.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	60 - 100	1.3e-13	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	245
AclWI	GGATC	4 cut(s)	129, 257, 290, 303
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	223, 263
AluBI	AGCT	2 cut(s)	47, 286
AluI	AGCT	2 cut(s)	47, 286
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	4 cut(s)	129, 257, 290, 303
AlwNI	CAGNNNCTG	2 cut(s)	25, 104
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	19, 47
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	31, 34
BccI	CCATC	2 cut(s)	80, 286
BceAI	ACGGC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	2 cut(s)	20, 48
BlsI	GCNGC	2 cut(s)	21, 49
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	6
BmuI	ACTGGG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	300
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	304
BseGI	GGATG	2 cut(s)	90, 297
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	2 cut(s)	131, 197
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	2 cut(s)	72, 212
BseXI	GCAGC	2 cut(s)	31, 34
BseYI	CCCAGC	1 cut(s)	286
BshFI	GGCC	1 cut(s)	238
BshVI	ATCGAT	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	238
Bsp143I	GATC	7 cut(s)	60, 87, 121, 169, 249, 295, 305
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	2 cut(s)	130, 198
BspDI	ATCGAT	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	4 cut(s)	129, 257, 290, 303
BsrI	ACTGG	1 cut(s)	98
BssMI	GATC	7 cut(s)	60, 87, 121, 169, 249, 295, 305
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	117, 206
BstF5I	GGATG	2 cut(s)	90, 297
BstKTI	GATC	7 cut(s)	63, 90, 124, 172, 252, 298, 308
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	7 cut(s)	60, 87, 121, 169, 249, 295, 305
BstV1I	GCAGC	2 cut(s)	31, 34
BstX2I	RGATCY	2 cut(s)	121, 295
BstYI	RGATCY	2 cut(s)	121, 295
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	90, 297
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	2 cut(s)	25, 104
Cfr13I	GGNCC	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	304
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	1 cut(s)	240
CviJI	RGCY	4 cut(s)	22, 47, 238, 286
CviKI_1	RGCY	4 cut(s)	22, 47, 238, 286
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	2 cut(s)	117, 206
DpnI	GATC	7 cut(s)	62, 89, 123, 171, 251, 297, 307
DpnII	GATC	7 cut(s)	60, 87, 121, 169, 249, 295, 305
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	1 cut(s)	243
FaiI	YATR	3 cut(s)	234, 241, 301
FatI	CATG	1 cut(s)	239
Fnu4HI	GCNGC	2 cut(s)	20, 48
FokI	GGATG	2 cut(s)	77, 304
Fsp4HI	GCNGC	2 cut(s)	20, 48
GluI	GCNGC	2 cut(s)	20, 48
GsaI	CCCAGC	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	238
HgaI	GACGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	15, 27, 87
Hpy188III	TCNNGA	3 cut(s)	119, 167, 312
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	19, 282
HpyF3I	CTNAG	2 cut(s)	117, 206
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	243
Kzo9I	GATC	7 cut(s)	60, 87, 121, 169, 249, 295, 305
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	104, 111, 268, 272, 292
Lsp1109I	GCAGC	2 cut(s)	31, 34
LweI	GCATC	1 cut(s)	6
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	37, 100
MalI	GATC	7 cut(s)	62, 89, 123, 171, 251, 297, 307
MboI	GATC	7 cut(s)	60, 87, 121, 169, 249, 295, 305
MboII	GAAGA	2 cut(s)	57, 300
MflI	RGATCY	2 cut(s)	121, 295
MluCI	AATT	2 cut(s)	33, 212
MnlI	CCTC	7 cut(s)	33, 90, 93, 121, 190, 193, 201
NdeII	GATC	7 cut(s)	60, 87, 121, 169, 249, 295, 305
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	2 cut(s)	37, 100
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	21, 49
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	236
PstNI	CAGNNNCTG	2 cut(s)	25, 104
PsuI	RGATCY	2 cut(s)	121, 295
PsyI	GACNNNGTC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SatI	GCNGC	2 cut(s)	20, 48
Sau3AI	GATC	7 cut(s)	60, 87, 121, 169, 249, 295, 305
Sau96I	GGNCC	1 cut(s)	236
SetI	ASST	6 cut(s)	44, 49, 82, 204, 281, 288
SfaNI	GCATC	1 cut(s)	6
Sse9I	AATT	2 cut(s)	33, 212
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	68, 304
TasI	AATT	2 cut(s)	33, 212
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	37, 100
TseI	GCWGC	2 cut(s)	19, 47
Tsp45I	GTSAC	2 cut(s)	37, 100
TspRI	CASTG	1 cut(s)	105
Tth111I	GACNNNGTC	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.