Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Reverse (-)

83315043 .. 83315770

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTGGGTGTTCTGCTTAGAGATTTGAAGCTTGGAGGTGATGCGATTAGGTGGCTTTGCTCTTTCTTGATTGTGAACAATTACCCTGATCTTGAGGATGTTCCGTATCTGAAGCAAGTGTTTGAGGGAGTTCAGGGCATTCTTGATGATAAACTCGTCTCTGGTGGCCATGATATTAGTGATGGTGGACTTCTGGTCTATGCCGTTGAGATGGCATTTGCTGGGAATTGTGGCATTAATTTGGACGAAAGTACCTTCTTTCATAAGGGACATATGGGAGGAAGTGTTGGTGGTAGTGGCGGTGTTGCAGCAGCCTTTGGTTGCAACGTGGGTAGTGATGGTGGTGACAGTGGCGAGGATGGGGTTGAAGTGCTGCGGCGATGGGGAGGGGAGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

134

Amino Acids

13.92

Weight (kDa)

4.55

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	31 - 88	1.7e-09	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	300, 376
AcoI	YGGCCR	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	28, 368
AhdI	GACNNNNNGTC	1 cut(s)	194
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	3 cut(s)	308, 311, 373
AseI	ATTAAT	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	50, 356
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BalI	TGGCCA	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	320, 323, 360
BccI	CCATC	5 cut(s)	176, 205, 332, 353, 375
BceAI	ACGGC	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	163
BisI	GCNGC	4 cut(s)	309, 312, 374, 377
BlsI	GCNGC	4 cut(s)	310, 313, 375, 378
BmeRI	GACNNNNNGTC	1 cut(s)	194
BmsI	GCATC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
BseGI	GGATG	2 cut(s)	103, 364
BseXI	GCAGC	3 cut(s)	320, 323, 360
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	2 cut(s)	300, 376
BspANI	GGCC	1 cut(s)	168
BssMI	GATC	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	103, 364
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	320, 323, 360
BsuRI	GGCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	103, 364
BtsIMutI	CAGTG	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	4 cut(s)	31, 55, 168, 314
CviKI_1	RGCY	4 cut(s)	31, 55, 168, 314
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DriI	GACNNNNNGTC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	389
Eam1105I	GACNNNNNGTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	1 cut(s)	173
FaiI	YATR	5 cut(s)	171, 201, 264, 273, 275
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	1 cut(s)	169
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	309, 312, 374, 377
FokI	GGATG	2 cut(s)	110, 371
Fsp4HI	GCNGC	4 cut(s)	309, 312, 374, 377
GluI	GCNGC	4 cut(s)	309, 312, 374, 377
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	29
HphI	GGTGA	2 cut(s)	50, 356
Hpy166II	GTNNAC	2 cut(s)	76, 188
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	3 cut(s)	67, 92, 143
Hpy8I	GTNNAC	2 cut(s)	76, 188
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	308, 324
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	5 cut(s)	99, 119, 147, 179, 207
Lsp1109I	GCAGC	3 cut(s)	320, 323, 360
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	3 cut(s)	79, 226, 238
MluNI	TGGCCA	1 cut(s)	168
MnlI	CCTC	6 cut(s)	29, 88, 118, 272, 349, 380
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	138
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	344
PctI	GAATGC	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	310, 313, 375, 378
PshBI	ATTAAT	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	4 cut(s)	309, 312, 374, 377
Sau3AI	GATC	1 cut(s)	88
SetI	ASST	5 cut(s)	33, 40, 53, 257, 330
SfaNI	GCATC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	79, 226, 238
SsiI	CCGC	2 cut(s)	300, 376
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	1 cut(s)	330
TasI	AATT	3 cut(s)	79, 226, 238
TauI	GCSGC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	3 cut(s)	308, 311, 373
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	355
VspI	ATTAAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.