Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003151

Physical Location & Seq

Genomic Coordinates Forward (+)

18988519 .. 18989909

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAAGTTGTAAAACTTGTCATTACGATTTACTTAAATAACAGCCGTAAGATAAAAGAGAGTAAATTTCTACCGTTAGATTTTATTTCACTTATATTATTAGAACTTTTTGGGACAAAAAGATCCCTTCCAGCCCTAATCCCTTTCGATCTCCCCACTCCCATAACCCTCTCTCCCGACTCGCCGCCTGTTCTTCCTAGCCCCTCTTTCCCGCCGTATGTTCTTCCGGTAGCCTCTCTCAGTATCTCTTTTCTCCTCCCTCGTGCACTGGACGCCTGGACGGAATCATTCTTGATCTTATCATCTCTGCTCTGGTCGTCTCTACATCTCCGCATTCTCCAAATTCCACTCCAGGGAGAGCTCTATAATTATTCCAGATGTGGTAACACATTCAATTGCAACCATCCTGTTGTGCACCAGTTTATTGTAGACTGCTTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0010021 GO:0010368 GO:0015980 GO:0016052 GO:0016787 GO:0016798 GO:0019156 GO:0032991 GO:0043033 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901575 GO:1901576 GO:1902494 GO:2000896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase CBM_48

Protein Analysis

148

Amino Acids

16.6

Weight (kDa)

8.88

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39930 AT2G39930 AT2G39930
fragaria_vesca	FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440
malus_domestica	MD13G1236000.v1.1 MD16G1240700.v1.1 MD16G1240800.v1.1 MD16G1241000.v1.1
prunus_persica	Prupe.1G067700_v2.0.a1 Prupe.1G067700_v2.0.a1
pyrus_communis	pycom13g20870 pycom13g20880 pycom13g21910 pycom16g20170
rosa_chinensis	RchiOBHm_Chr4g0398221 RchiOBHm_Chr5g0038481
rosa_laevigata	RLG00000009377
rosa_multiflora	Rmu_sc0013706.1_g000001 Rmu_sc0020611.1_g000004 Rmu_sc0032626.1_g000001 Rmu_ssc0000049.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343210
rosa_rugosa	Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh4AG084200 Rh4BG081600 Rh4CG091500 Rh4CG091600 Rh4DG076700
rosa_wichuraiana	Rw4G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	3 cut(s)	185, 212, 331
AclWI	GGATC	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	65, 342
AcyI	GRCGYC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	275, 351
AluBI	AGCT	1 cut(s)	361
AluI	AGCT	1 cut(s)	361
Alw21I	GWGCWC	3 cut(s)	268, 363, 417
Alw26I	GTCTC	1 cut(s)	324
Alw44I	GTGCAC	2 cut(s)	264, 413
AlwI	GGATC	1 cut(s)	117
ApaLI	GTGCAC	2 cut(s)	264, 413
ApoI	RAATTY	2 cut(s)	65, 342
BaeGI	GKGCMC	2 cut(s)	268, 417
BanII	GRGCYC	1 cut(s)	363
BauI	CACGAG	1 cut(s)	261
Bbv12I	GWGCWC	3 cut(s)	268, 363, 417
BccI	CCATC	1 cut(s)	411
BceAI	ACGGC	2 cut(s)	30, 199
BciT130I	CCWGG	2 cut(s)	277, 353
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	277, 353
BmrFI	CCNGG	2 cut(s)	277, 353
BpmI	CTGGAG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	273, 418
BseBI	CCWGG	2 cut(s)	277, 353
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	2 cut(s)	273, 418
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	2 cut(s)	268, 417
BsiHKAI	GWGCWC	3 cut(s)	268, 363, 417
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	324
BsmBI	CGTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	268, 363, 417
Bsp143I	GATC	3 cut(s)	122, 148, 294
BspACI	CCGC	3 cut(s)	185, 212, 331
BspCNI	CTCAG	1 cut(s)	252
BspPI	GGATC	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	273, 418
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	3 cut(s)	122, 148, 294
BssNI	GRCGYC	1 cut(s)	273
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	277, 353
Bst4CI	ACNGT	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	3 cut(s)	125, 151, 297
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	3 cut(s)	122, 148, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	277, 353
BstSCI	CCNGG	2 cut(s)	275, 351
BstSLI	GKGCMC	2 cut(s)	268, 417
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	266
CseI	GACGC	1 cut(s)	281
CviJI	RGCY	5 cut(s)	45, 134, 201, 233, 361
CviKI_1	RGCY	5 cut(s)	45, 134, 201, 233, 361
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	124, 150, 296
DpnII	GATC	3 cut(s)	122, 148, 294
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	275, 351
EcoT38I	GRGCYC	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	324
FaiI	YATR	4 cut(s)	95, 164, 219, 366
FaqI	GGGAC	1 cut(s)	127
FauI	CCCGC	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	335
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	273
HinfI	GANTC	2 cut(s)	179, 284
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	3 cut(s)	266, 415, 430
Hpy188III	TCNNGA	3 cut(s)	176, 292, 375
Hpy8I	GTNNAC	3 cut(s)	266, 415, 430
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	266, 399, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	122, 148, 294
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	3 cut(s)	124, 150, 296
MboI	GATC	3 cut(s)	122, 148, 294
MboII	GAAGA	2 cut(s)	185, 215
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	3 cut(s)	268, 363, 417
MluCI	AATT	4 cut(s)	65, 342, 367, 394
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	179, 214, 244, 266, 270, 432
MseI	TTAA	1 cut(s)	35
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	277, 353
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	2 cut(s)	277, 353
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	3 cut(s)	122, 148, 294
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	275, 351
PspGI	CCWGG	2 cut(s)	275, 351
PsuI	RGATCY	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	3 cut(s)	122, 148, 294
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	277, 353
SduI	GDGCHC	3 cut(s)	268, 363, 417
SetI	ASST	2 cut(s)	363, 443
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	4 cut(s)	65, 342, 367, 394
SsiI	CCGC	3 cut(s)	185, 212, 331
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	275, 351
TaaI	ACNGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	65, 342, 367, 394
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	273
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	273
VneI	GTGCAC	2 cut(s)	264, 413
XapI	RAATTY	2 cut(s)	65, 342
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.