Rmu_sc0032626.1_g000001

Isoamylase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032626.1
Physical Location & Seq
Forward (+)
1 .. 10636
10636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032626.1_g000001.1.cds

Sequence Viewer

Length: 1350 bp
gcagttatacgcagaggtgaatttgggagtctaggtcctgatggtaattgctggcctcaaatggcctgcacggtaccttcttttgatgataagttcaactgggaaggagatttacctctgaagtatccacaaaaagatcttatcatatatgaaatgcatgtgcgaggttttacaaggcatgaatcgagcatgactgaattgcctggtacatactgtggtttggtggagaagcttgatcacttaaaggaacttgggatcaactgtatagagttaatgccatgtcatgagttcaatgaactggagtactttggctacaattctgtcttgggtgactacaaggtaaatttttggggatattcaactgtcagttacttttcaccaatgataagatattcatccgctggcacacgtaattgtggccgtgatgcaataaatgaagtcaagtttcttgttaaagaagcacatagacgtggaattgaggtgatcatggatgttgttttcaatcacacagctgaaggaaatgaaaatggtcccattttgtcttttagaggtgctgacaacagtgtctattacatgctcgcccctaagggagagttttataattattcagggtgtggtaacacattcaattgcaaccatcctgttgtgcgacaattcatagtagattgcttgagatattgggtaacagagatgcacgtggatgggttccgctttgatcttgcttctattatgaccaggggtaccagtctctgggattcaactaatgtatacgggagtctgatagaaggtgacttgttgacaactggaacccctcttgctagccctccattgattgacatgattagtaatgacccaatacttcatggagtgaagctgatagctgaagcttgggatgcaggaggcctgtaccaacttggcatgtttcctcactggggtatttggtcagaatggaacgggaagccccggctagcttcaagcatcacggtggccgatgctaattcccttttctcttcctccttttctcctagcggtcttggtggcatcggatcaggcgtggtgtccgggactaagggttggagaggttcggatgattcttggggtgcagcagtggtggctagcagagcagtcataccttttgtcgctgacgaggagcagctaggtggcacaacagccattggtggccttggcgctgagattcgaggcgtaggctcaagtttgaagcaacggaggtggtctggaggcctcatgagctgctctaggattccggcgacgttgagagatacgaccactaacatcaatattcacgggtttgttgtatctggatcatgggtttgttgtagcttggcctaa

Protein Analysis

449

Amino Acids

49.26

Weight (kDa)

5.41

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AasI GACNNNNNNGTC 1 cut(s) 563
Acc65I GGTACC 2 cut(s) 73, 740
AccB1I GGYRCC 2 cut(s) 73, 740
AccB7I CCANNNNNTGG 1 cut(s) 750
AccI GTMKAC 1 cut(s) 768
AciI CCGC 3 cut(s) 399, 709, 1029
AclWI GGATC 3 cut(s) 263, 1054, 1330
AcoI YGGCCR 2 cut(s) 418, 987
AcsI RAATTY 2 cut(s) 20, 343
AcuI CTGAAG 3 cut(s) 140, 534, 903
AcvI CACGTG 1 cut(s) 697
AfaI GTAC 5 cut(s) 75, 208, 305, 742, 908
AfiI CCNNNNNNNGG 2 cut(s) 750, 932
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 8 cut(s) 97, 292, 360, 502, 628, 759, 975, 1219
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 2 cut(s) 202, 734
AluBI AGCT 9 cut(s) 232, 512, 874, 881, 887, 971, 1156, 1251, 1341
AluI AGCT 9 cut(s) 232, 512, 874, 881, 887, 971, 1156, 1251, 1341
Alw26I GTCTC 1 cut(s) 752
AlwI GGATC 3 cut(s) 263, 1054, 1330
AlwNI CAGNNNCTG 1 cut(s) 750
AoxI GGCC 8 cut(s) 53, 63, 418, 901, 987, 1180, 1240, 1344
ApeKI GCWGC 3 cut(s) 1103, 1153, 1251
ApoI RAATTY 2 cut(s) 20, 343
Asp718I GGTACC 2 cut(s) 73, 740
AspLEI GCGC 1 cut(s) 1190
AspS9I GGNCC 2 cut(s) 35, 530
AsuC2I CCSGG 2 cut(s) 964, 1063
AsuHPI GGTGA 5 cut(s) 29, 341, 369, 493, 800
AsuNHI GCTAGC 3 cut(s) 818, 967, 1115
AvaII GGWCC 2 cut(s) 35, 530
AxyI CCTNAGG 1 cut(s) 585
BanI GGYRCC 2 cut(s) 73, 740
BarI GAAGNNNNNNTAC 2 cut(s) 96, 128
BbrPI CACGTG 1 cut(s) 697
BbvI GCAGC 3 cut(s) 1115, 1165, 1238
BccI CCATC 3 cut(s) 35, 645, 695
BceAI ACGGC 1 cut(s) 405
BciT130I CCWGG 2 cut(s) 204, 736
BciVI GTATCC 1 cut(s) 135
BclI TGATCA 2 cut(s) 235, 483
BcnI CCSGG 2 cut(s) 964, 1063
BcoDI GTCTC 1 cut(s) 752
BfaI CTAG 7 cut(s) 32, 819, 968, 1026, 1116, 1157, 1257
BfoI RGCGCY 1 cut(s) 1191
BfuI GTATCC 1 cut(s) 135
BglII AGATCT 1 cut(s) 136
BisI GCNGC 3 cut(s) 1104, 1154, 1252
BlsI GCNGC 3 cut(s) 1105, 1155, 1253
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 4 cut(s) 204, 736, 964, 1063
Bme18I GGWCC 2 cut(s) 35, 530
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 35, 530
BmiI GGNNCC 5 cut(s) 75, 532, 707, 742, 808
BmrFI CCNGG 4 cut(s) 204, 736, 964, 1063
BmrI ACTGGG 2 cut(s) 109, 940
BmsI GCATC 6 cut(s) 415, 681, 883, 982, 987, 1050
BmtI GCTAGC 3 cut(s) 822, 971, 1119
BmuI ACTGGG 2 cut(s) 109, 940
BpmI CTGGAG 2 cut(s) 320, 1257
BpuEI CTTGAG 2 cut(s) 691, 1195
BpuMI CCSGG 2 cut(s) 964, 1063
BsaAI YACGTR 2 cut(s) 410, 697
BsaBI GATNNNNATC 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 735, 962, 1183
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 750, 932
Bse1I ACTGG 5 cut(s) 104, 303, 744, 808, 935
Bse21I CCTNAGG 1 cut(s) 585
Bse8I GATNNNNATC 1 cut(s) 394
BseBI CCWGG 2 cut(s) 204, 736
BseDI CCNNGG 3 cut(s) 735, 962, 1183
BseGI GGATG 6 cut(s) 395, 496, 637, 706, 898, 1093
BseJI GATNNNNATC 1 cut(s) 394
BseLI CCNNNNNNNGG 2 cut(s) 750, 932
BseMII CTCAG 1 cut(s) 1182
BseNI ACTGG 5 cut(s) 104, 303, 744, 808, 935
BseRI GAGGAG 1 cut(s) 1163
BseXI GCAGC 3 cut(s) 1115, 1165, 1238
BsgI GTGCAG 2 cut(s) 52, 1122
BshFI GGCC 8 cut(s) 55, 65, 420, 903, 989, 1182, 1242, 1346
BshNI GGYRCC 2 cut(s) 73, 740
BsiSI CCGG 3 cut(s) 964, 1062, 1265
BslFI GGGAC 2 cut(s) 516, 1078
BslI CCNNNNNNNGG 2 cut(s) 750, 932
BsmAI GTCTC 1 cut(s) 752
BsmFI GGGAC 2 cut(s) 516, 1078
BsnI GGCC 8 cut(s) 55, 65, 420, 903, 989, 1182, 1242, 1346
Bsp143I GATC 7 cut(s) 136, 235, 255, 483, 715, 1046, 1322
BspACI CCGC 3 cut(s) 399, 709, 1029
BspANI GGCC 8 cut(s) 55, 65, 420, 903, 989, 1182, 1242, 1346
BspCNI CTCAG 1 cut(s) 1183
BspHI TCATGA 2 cut(s) 283, 1245
BspLI GGNNCC 5 cut(s) 75, 532, 707, 742, 808
BspOI GCTAGC 3 cut(s) 822, 971, 1119
BspPI GGATC 3 cut(s) 263, 1054, 1330
BspT107I GGYRCC 2 cut(s) 73, 740
BsrI ACTGG 5 cut(s) 104, 303, 744, 808, 935
BssECI CCNNGG 3 cut(s) 735, 962, 1183
BssMI GATC 7 cut(s) 136, 235, 255, 483, 715, 1046, 1322
BssNAI GTATAC 1 cut(s) 769
BssT1I CCWWGG 1 cut(s) 1183
Bst1107I GTATAC 1 cut(s) 769
Bst2UI CCWGG 2 cut(s) 204, 736
Bst4CI ACNGT 6 cut(s) 73, 215, 263, 364, 563, 985
Bst6I CTCTTC 1 cut(s) 1015
BstBAI YACGTR 2 cut(s) 410, 697
BstC8I GCNNGC 7 cut(s) 53, 67, 403, 579, 820, 969, 1117
BstDEI CTNAG 3 cut(s) 585, 1068, 1191
BstF5I GGATG 6 cut(s) 395, 496, 637, 706, 898, 1093
BstH2I RGCGCY 1 cut(s) 1191
BstHHI GCGC 1 cut(s) 1190
BstKTI GATC 7 cut(s) 139, 238, 258, 486, 718, 1049, 1325
BstMAI GTCTC 1 cut(s) 752
BstMBI GATC 7 cut(s) 136, 235, 255, 483, 715, 1046, 1322
BstMWI GCNNNNNNNGC 4 cut(s) 893, 1112, 1121, 1248
BstNI CCWGG 2 cut(s) 204, 736
BstNSI RCATGY 3 cut(s) 161, 577, 922
BstSCI CCNGG 4 cut(s) 202, 734, 962, 1061
BstV1I GCAGC 3 cut(s) 1115, 1165, 1238
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BstZ17I GTATAC 1 cut(s) 769
Bsu36I CCTNAGG 1 cut(s) 585
BsuI GTATCC 1 cut(s) 135
BsuRI GGCC 8 cut(s) 55, 65, 420, 903, 989, 1182, 1242, 1346
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 6 cut(s) 395, 496, 637, 706, 898, 1093
BtsI GCAGTG 1 cut(s) 1113
BtsIMutI CAGTG 3 cut(s) 568, 928, 1113
Cac8I GCNNGC 7 cut(s) 53, 67, 403, 579, 820, 969, 1117
CaiI CAGNNNCTG 1 cut(s) 750
CciI TCATGA 2 cut(s) 283, 1245
CfoI GCGC 1 cut(s) 1190
Cfr13I GGNCC 2 cut(s) 35, 530
Csp6I GTAC 5 cut(s) 74, 207, 304, 741, 907
CspCI CAANNNNNGTGG 2 cut(s) 1211, 1246
CviQI GTAC 5 cut(s) 74, 207, 304, 741, 907
DdeI CTNAG 3 cut(s) 585, 1068, 1191
DpnI GATC 7 cut(s) 138, 237, 257, 485, 717, 1048, 1324
DpnII GATC 7 cut(s) 136, 235, 255, 483, 715, 1046, 1322
DrdI GACNNNNNNGTC 1 cut(s) 563
DseDI GACNNNNNNGTC 1 cut(s) 563
EaeI YGGCCR 2 cut(s) 418, 987
Eam1104I CTCTTC 1 cut(s) 1015
EarI CTCTTC 1 cut(s) 1015
Eco130I CCWWGG 1 cut(s) 1183
Eco147I AGGCCT 2 cut(s) 903, 1242
Eco47I GGWCC 2 cut(s) 35, 530
Eco57I CTGAAG 3 cut(s) 140, 534, 903
Eco72I CACGTG 1 cut(s) 697
Eco81I CCTNAGG 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 202, 734
EcoT14I CCWWGG 1 cut(s) 1183
EcoT22I ATGCAT 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 1183
FaqI GGGAC 2 cut(s) 516, 1078
FbaI TGATCA 2 cut(s) 235, 483
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 3 cut(s) 1104, 1154, 1252
FokI GGATG 6 cut(s) 382, 503, 624, 713, 905, 1100
Fsp4HI GCNGC 3 cut(s) 1104, 1154, 1252
FspBI CTAG 7 cut(s) 32, 819, 968, 1026, 1116, 1157, 1257
GlaI GCGC 1 cut(s) 1189
GluI GCNGC 3 cut(s) 1104, 1154, 1252
GsuI CTGGAG 2 cut(s) 320, 1257
HaeII RGCGCY 1 cut(s) 1191
HaeIII GGCC 8 cut(s) 55, 65, 420, 903, 989, 1182, 1242, 1346
HapII CCGG 3 cut(s) 964, 1062, 1265
HhaI GCGC 1 cut(s) 1190
Hin6I GCGC 1 cut(s) 1188
HinP1I GCGC 1 cut(s) 1188
HincII GTYRAC 1 cut(s) 798
HindII GTYRAC 1 cut(s) 798
HindIII AAGCTT 2 cut(s) 230, 885
HinfI GANTC 7 cut(s) 28, 182, 755, 775, 1091, 1195, 1261
HpaII CCGG 3 cut(s) 964, 1062, 1265
HphI GGTGA 5 cut(s) 29, 341, 369, 493, 800
Hpy166II GTNNAC 2 cut(s) 769, 798
Hpy188I TCNGA 5 cut(s) 120, 780, 946, 1046, 1087
Hpy188III TCNNGA 5 cut(s) 38, 284, 1236, 1246, 1320
Hpy8I GTNNAC 2 cut(s) 769, 798
Hpy99I CGWCG 1 cut(s) 1273
HpyAV CCTTC 4 cut(s) 87, 98, 509, 779
HpyCH4III ACNGT 6 cut(s) 73, 215, 263, 364, 563, 985
HpyCH4IV ACGT 4 cut(s) 409, 469, 696, 1271
HpyCH4V TGCA 7 cut(s) 69, 157, 428, 633, 694, 896, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 893, 1112, 1121, 1248
HpyF3I CTNAG 3 cut(s) 585, 1068, 1191
HpySE526I ACGT 4 cut(s) 409, 469, 696, 1271
HspAI GCGC 1 cut(s) 1188
KpnI GGTACC 2 cut(s) 77, 744
Ksp22I TGATCA 2 cut(s) 235, 483
Kzo9I GATC 7 cut(s) 136, 235, 255, 483, 715, 1046, 1322
LmnI GCTCC 1 cut(s) 1150
Lsp1109I GCAGC 3 cut(s) 1115, 1165, 1238
LweI GCATC 6 cut(s) 415, 681, 883, 982, 987, 1050
MaeI CTAG 7 cut(s) 32, 819, 968, 1026, 1116, 1157, 1257
MaeII ACGT 4 cut(s) 409, 469, 696, 1271
MaeIII GTNAC 5 cut(s) 329, 368, 617, 682, 788
MalI GATC 7 cut(s) 138, 237, 257, 485, 717, 1048, 1324
MboI GATC 7 cut(s) 136, 235, 255, 483, 715, 1046, 1322
MboII GAAGA 1 cut(s) 1002
MfeI CAATTG 1 cut(s) 628
MflI RGATCY 1 cut(s) 136
MlyI GAGTC 2 cut(s) 37, 784
MmeI TCCRAC 1 cut(s) 1055
Mph1103I ATGCAT 1 cut(s) 159
MseI TTAA 3 cut(s) 242, 272, 453
MslI CAYNNNNRTG 3 cut(s) 468, 699, 983
MspA1I CMGCKG 2 cut(s) 401, 512
MspI CCGG 3 cut(s) 964, 1062, 1265
MspR9I CCNGG 4 cut(s) 204, 736, 964, 1063
MunI CAATTG 1 cut(s) 628
MvaI CCWGG 2 cut(s) 204, 736
MwoI GCNNNNNNNGC 4 cut(s) 893, 1112, 1121, 1248
NciI CCSGG 2 cut(s) 964, 1063
NdeII GATC 7 cut(s) 136, 235, 255, 483, 715, 1046, 1322
NheI GCTAGC 3 cut(s) 818, 967, 1115
NlaIV GGNNCC 5 cut(s) 75, 532, 707, 742, 808
NmuCI GTSAC 2 cut(s) 329, 788
NsiI ATGCAT 1 cut(s) 159
NspI RCATGY 3 cut(s) 161, 577, 922
PagI TCATGA 2 cut(s) 283, 1245
PceI AGGCCT 2 cut(s) 903, 1242
PcsI WCGNNNNNNNCGW 1 cut(s) 1050
PfeI GAWTC 5 cut(s) 182, 755, 1091, 1195, 1261
PflMI CCANNNNNTGG 1 cut(s) 750
PfoI TCCNGGA 1 cut(s) 1061
PkrI GCNGC 3 cut(s) 1105, 1155, 1253
PleI GAGTC 2 cut(s) 36, 783
PmaCI CACGTG 1 cut(s) 697
PmlI CACGTG 1 cut(s) 697
PpsI GAGTC 2 cut(s) 36, 783
Ppu21I YACGTR 2 cut(s) 410, 697
PpuMI RGGWCCY 1 cut(s) 35
PsiI TTATAA 1 cut(s) 600
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 202, 734
PspCI CACGTG 1 cut(s) 697
PspGI CCWGG 2 cut(s) 202, 734
PspN4I GGNNCC 5 cut(s) 75, 532, 707, 742, 808
PspPI GGNCC 2 cut(s) 35, 530
PspPPI RGGWCCY 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 750
PsuI RGATCY 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 5 cut(s) 75, 208, 305, 742, 908
RsaNI GTAC 5 cut(s) 74, 207, 304, 741, 907
RseI CAYNNNNRTG 3 cut(s) 468, 699, 983
SaqAI TTAA 3 cut(s) 242, 272, 453
SatI GCNGC 3 cut(s) 1104, 1154, 1252
Sau3AI GATC 7 cut(s) 136, 235, 255, 483, 715, 1046, 1322
Sau96I GGNCC 2 cut(s) 35, 530
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 2 cut(s) 37, 784
ScrFI CCNGG 4 cut(s) 204, 736, 964, 1063
SfaNI GCATC 6 cut(s) 415, 681, 883, 982, 987, 1050
SinI GGWCC 2 cut(s) 35, 530
SmiMI CAYNNNNRTG 3 cut(s) 468, 699, 983
SmlI CTYRAG 2 cut(s) 670, 1210
SmoI CTYRAG 2 cut(s) 670, 1210
SseBI AGGCCT 2 cut(s) 903, 1242
SsiI CCGC 3 cut(s) 399, 709, 1029
SspI AATATT 1 cut(s) 1300
SspMI CTAG 7 cut(s) 32, 819, 968, 1026, 1116, 1157, 1257
StuI AGGCCT 2 cut(s) 903, 1242
StyD4I CCNGG 4 cut(s) 202, 734, 962, 1061
StyI CCWWGG 1 cut(s) 1183
TaaI ACNGT 6 cut(s) 73, 215, 263, 364, 563, 985
TaiI ACGT 4 cut(s) 412, 472, 699, 1274
TaqI TCGA 2 cut(s) 185, 1198
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 5 cut(s) 182, 755, 1091, 1195, 1261
Tru1I TTAA 3 cut(s) 242, 272, 453
Tru9I TTAA 3 cut(s) 242, 272, 453
TscAI CASTG 3 cut(s) 568, 935, 1113
TseFI GTSAC 2 cut(s) 329, 788
TseI GCWGC 3 cut(s) 1103, 1153, 1251
Tsp45I GTSAC 2 cut(s) 329, 788
TspDTI ATGAA 8 cut(s) 165, 195, 309, 384, 450, 537, 646, 851
TspGWI ACGGA 1 cut(s) 1240
TspRI CASTG 3 cut(s) 568, 935, 1113
Van91I CCANNNNNTGG 1 cut(s) 750
VpaK11BI GGWCC 2 cut(s) 35, 530
XapI RAATTY 2 cut(s) 20, 343
XceI RCATGY 3 cut(s) 161, 577, 922
XmiI GTMKAC 1 cut(s) 768
XspI CTAG 7 cut(s) 32, 819, 968, 1026, 1116, 1157, 1257
ZrmI AGTACT 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.