Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003151

Physical Location & Seq

Genomic Coordinates Forward (+)

17863011 .. 17864858

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTATCAGGGTGTCCCGATGCTGTGTATGGGTGATGAATATGGCCATACAAAAGGGGGAAACAACAACACATATTGCCATGATAATTATATTAATTACTTTCGATGGGATAAGAAAGAAGAGTCCTCATCGGACTTTTTCAGATTTTGCTGCCTCATGACCAAATTCCGCCAGGAATGCGAGTCACTTGGGTTAAATGACTTCCCAACGGCAGAGAGGCTGCAGTGGCATGGTCATGCTCCTGGGGTGCCAGACTGGTCTGACACAAGCCGCTTTGTTGCCTTTACTCTGATGGACTCCGTGAAGAGAGAGCTGTATATCGCTTTCAATGCCACCCACTTAGCTGTGATCATTTCTCTGCCAGAGAGGCCTGGATACAGATGGGAGCCCTTGGTCGACACCAGCAAGCCTGCACCATTTGACTTCCTTACTAGCGACCTTCCAGAAAGAGATACCGCAGTTAAACAGTATGCTCACTTTCTCGACACCAATTTATATCCCATGCTAAGTTATTCTTCAGTCATCCTTTTACTTTCTCCCGTCGAAGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0010021 GO:0010368 GO:0015980 GO:0016052 GO:0016787 GO:0016798 GO:0019156 GO:0032991 GO:0043033 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901575 GO:1901576 GO:1902494 GO:2000896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase CBM_48

Protein Analysis

185

Amino Acids

21.29

Weight (kDa)

5.03

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39930 AT2G39930 AT2G39930
fragaria_vesca	FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440 FvH4_4g06440
malus_domestica	MD13G1236000.v1.1 MD16G1240700.v1.1 MD16G1240800.v1.1 MD16G1241000.v1.1
prunus_persica	Prupe.1G067700_v2.0.a1 Prupe.1G067700_v2.0.a1
pyrus_communis	pycom13g20870 pycom13g20880 pycom13g21910 pycom16g20170
rosa_chinensis	RchiOBHm_Chr4g0398221 RchiOBHm_Chr5g0038481
rosa_laevigata	RLG00000009377
rosa_multiflora	Rmu_sc0013706.1_g000001 Rmu_sc0020611.1_g000004 Rmu_sc0032626.1_g000001 Rmu_ssc0000049.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343210
rosa_rugosa	Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh4AG084200 Rh4BG081600 Rh4CG091500 Rh4CG091600 Rh4DG076700
rosa_wichuraiana	Rw4G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	3 cut(s)	169, 271, 456
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	501
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	3 cut(s)	171, 241, 370
AluBI	AGCT	2 cut(s)	313, 344
AluI	AGCT	2 cut(s)	313, 344
AlwI	GGATC	1 cut(s)	542
AoxI	GGCC	2 cut(s)	43, 368
ApeKI	GCWGC	2 cut(s)	150, 220
ApoI	RAATTY	1 cut(s)	164
AseI	ATTAAT	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	44
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BalI	TGGCCA	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	137, 207
BccI	CCATC	3 cut(s)	99, 286, 375
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	3 cut(s)	173, 243, 372
BciVI	GTATCC	1 cut(s)	368
BclI	TGATCA	1 cut(s)	348
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	368
BglI	GCCNNNNNGGC	1 cut(s)	367
BisI	GCNGC	3 cut(s)	151, 221, 271
BlsI	GCNGC	3 cut(s)	152, 222, 272
Bme1390I	CCNGG	3 cut(s)	173, 243, 372
BmiI	GGNNCC	2 cut(s)	249, 387
BmrFI	CCNGG	3 cut(s)	173, 243, 372
BmsI	GCATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	242, 390
Bse1I	ACTGG	1 cut(s)	260
BseBI	CCWGG	3 cut(s)	173, 243, 372
BseDI	CCNNGG	2 cut(s)	242, 390
BseGI	GGATG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	137, 207
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	45, 370
BshNI	GGYRCC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	45, 370
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	348, 547
BspACI	CCGC	3 cut(s)	169, 271, 456
BspANI	GGCC	2 cut(s)	45, 370
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	249, 387
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	242, 390
BssMI	GATC	2 cut(s)	348, 547
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	3 cut(s)	173, 243, 372
Bst4CI	ACNGT	1 cut(s)	468
Bst6I	CTCTTC	2 cut(s)	114, 299
BstC8I	GCNNGC	2 cut(s)	407, 411
BstDEI	CTNAG	2 cut(s)	340, 506
BstF5I	GGATG	1 cut(s)	522
BstKTI	GATC	2 cut(s)	351, 550
BstMBI	GATC	2 cut(s)	348, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 226, 329, 367
BstNI	CCWGG	3 cut(s)	173, 243, 372
BstSCI	CCNGG	3 cut(s)	171, 241, 370
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	137, 207
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuI	GTATCC	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	45, 370
BtsCI	GGATG	1 cut(s)	522
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	2 cut(s)	407, 411
CciI	TCATGA	1 cut(s)	156
CviAII	CATG	5 cut(s)	80, 157, 230, 236, 502
CviJI	RGCY	8 cut(s)	45, 220, 270, 313, 344, 370, 388, 409
CviKI_1	RGCY	8 cut(s)	45, 220, 270, 313, 344, 370, 388, 409
DdeI	CTNAG	2 cut(s)	340, 506
DpnI	GATC	2 cut(s)	350, 549
DpnII	GATC	2 cut(s)	348, 547
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	114, 299
EarI	CTCTTC	2 cut(s)	114, 299
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	390
Eco147I	AGGCCT	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	501
EcoRII	CCWGG	3 cut(s)	171, 241, 370
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	5 cut(s)	83, 160, 233, 239, 505
FalI	AAGNNNNNCTT	2 cut(s)	499, 531
FatI	CATG	5 cut(s)	79, 156, 229, 235, 501
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	3 cut(s)	151, 221, 271
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	3 cut(s)	151, 221, 271
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	3 cut(s)	151, 221, 271
HaeIII	GGCC	2 cut(s)	45, 370
Hin1II	CATG	5 cut(s)	83, 160, 233, 239, 505
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	122, 182, 296
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	4 cut(s)	133, 143, 262, 291
Hpy188III	TCNNGA	4 cut(s)	16, 157, 443, 482
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	223, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 226, 329, 367
HpyF3I	CTNAG	2 cut(s)	340, 506
Hsp92II	CATG	5 cut(s)	83, 160, 233, 239, 505
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	348, 547
LmnI	GCTCC	2 cut(s)	244, 385
Lsp1109I	GCAGC	2 cut(s)	137, 207
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	2 cut(s)	350, 549
MboI	GATC	2 cut(s)	348, 547
MboII	GAAGA	3 cut(s)	131, 316, 507
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	4 cut(s)	85, 94, 164, 490
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	131, 191, 290
MnlI	CCTC	4 cut(s)	136, 164, 210, 360
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	3 cut(s)	93, 194, 462
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	45
MspR9I	CCNGG	3 cut(s)	173, 243, 372
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	3 cut(s)	173, 243, 372
MwoI	GCNNNNNNNGC	4 cut(s)	177, 226, 329, 367
NdeII	GATC	2 cut(s)	348, 547
NlaIII	CATG	5 cut(s)	83, 160, 233, 239, 505
NlaIV	GGNNCC	2 cut(s)	249, 387
NmuCI	GTSAC	1 cut(s)	183
PagI	TCATGA	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	370
PctI	GAATGC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	152, 222, 272
PleI	GAGTC	3 cut(s)	130, 190, 290
PpsI	GAGTC	3 cut(s)	130, 190, 290
PshBI	ATTAAT	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	171, 241, 370
PspGI	CCWGG	3 cut(s)	171, 241, 370
PspN4I	GGNNCC	2 cut(s)	249, 387
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	547
RseI	CAYNNNNRTG	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	93, 194, 462
SatI	GCNGC	3 cut(s)	151, 221, 271
Sau3AI	GATC	2 cut(s)	348, 547
SchI	GAGTC	3 cut(s)	131, 191, 290
ScrFI	CCNGG	3 cut(s)	173, 243, 372
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	3 cut(s)	315, 346, 441
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	4 cut(s)	85, 94, 164, 490
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	3 cut(s)	169, 271, 456
SspMI	CTAG	1 cut(s)	432
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	3 cut(s)	171, 241, 370
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	468
TaqI	TCGA	4 cut(s)	103, 396, 483, 543
TasI	AATT	4 cut(s)	85, 94, 164, 490
TauI	GCSGC	1 cut(s)	273
Tru1I	TTAA	3 cut(s)	93, 194, 462
Tru9I	TTAA	3 cut(s)	93, 194, 462
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	150, 220
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	93
XapI	RAATTY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.